Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 KLK15-201ENST00000326856 1389 ntAPPRIS ALT1 TSL 5 BASIC13.76□□□□□ -0.21
ABCA1O95477 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC13.76□□□□□ -0.21
ABCA1O95477 AL662844.4-201ENST00000606367 2838 ntBASIC13.76□□□□□ -0.21
ABCA1O95477 CYHR1-204ENST00000438911 2020 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 PDE2A-226ENST00000544570 3119 ntTSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 RPS2P32-201ENST00000439199 892 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
ABCA1O95477 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 GIMAP3P-201ENST00000495150 836 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 AC003101.2-201ENST00000612557 442 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 GPER1-207ENST00000619052 571 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 LINC01451-201ENST00000623792 534 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 RAB34-223ENST00000636154 730 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 SELENBP1-204ENST00000426705 1928 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 ELF3-201ENST00000359651 4994 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 NEIL1-221ENST00000569035 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 NAA10-201ENST00000370009 837 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 NAA10-203ENST00000370015 1002 ntTSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA1O95477 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 AC137894.1-201ENST00000526431 547 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 RNASEK-203ENST00000549393 783 ntTSL 3 BASIC13.75□□□□□ -0.21
ABCA1O95477 AC106886.1-201ENST00000568660 600 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC13.75□□□□□ -0.21
ABCA1O95477 AC018529.1-201ENST00000613063 361 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 SPDYE12P-201ENST00000618416 771 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 FAM178B-204ENST00000490605 2710 ntAPPRIS ALT2 TSL 5 BASIC13.75□□□□□ -0.21
ABCA1O95477 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC13.75□□□□□ -0.21
ABCA1O95477 GRAMD4P3-201ENST00000621665 1669 ntBASIC13.75□□□□□ -0.21
ABCA1O95477 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.75□□□□□ -0.21
ABCA1O95477 TEAD2-203ENST00000539846 1444 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 MMP17-206ENST00000535291 2301 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 RUVBL1-201ENST00000322623 1761 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 SMC4-201ENST00000344722 5356 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 NKPD1-201ENST00000317951 4233 ntAPPRIS P1 TSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ABCA1O95477 NDUFB8-202ENST00000370320 684 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AC008443.3-201ENST00000412295 549 ntTSL 4 BASIC13.74□□□□□ -0.21
ABCA1O95477 AP006294.1-201ENST00000415407 339 ntBASIC13.74□□□□□ -0.21
ABCA1O95477 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 AC008738.7-201ENST00000609744 511 ntBASIC13.74□□□□□ -0.21
ABCA1O95477 TEX28P1-201ENST00000613479 1221 ntBASIC13.74□□□□□ -0.21
ABCA1O95477 TEX28P2-201ENST00000617764 1221 ntBASIC13.74□□□□□ -0.21
ABCA1O95477 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 TGFBR2-202ENST00000359013 4605 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC13.74□□□□□ -0.21
ABCA1O95477 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 TMTC1-207ENST00000552618 3915 ntTSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC13.74□□□□□ -0.21
ABCA1O95477 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC13.74□□□□□ -0.21
ABCA1O95477 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 FENDRR-206ENST00000599749 2843 ntTSL 3 BASIC13.74□□□□□ -0.21
ABCA1O95477 CBX7-201ENST00000216133 4081 ntAPPRIS P1 TSL 1 (best) BASIC13.74□□□□□ -0.21
ABCA1O95477 MAPKAP1-202ENST00000350766 3256 ntTSL 1 (best) BASIC13.74□□□□□ -0.21
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms