Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 DMKN-209ENST00000429837 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 ATP5G2P1-201ENST00000433580 426 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 FIBP-212ENST00000533045 1173 ntTSL 5 BASIC15.98■□□□□ 0.15
HDAC3O15379 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.98■□□□□ 0.15
HDAC3O15379 RNF151-202ENST00000569210 853 ntTSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 IER2-202ENST00000587885 1291 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
HDAC3O15379 MTDHP4-201ENST00000600287 670 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 TNRC18P2-201ENST00000417666 2714 ntBASIC15.98■□□□□ 0.15
HDAC3O15379 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HDAC3O15379 CARD10-201ENST00000251973 3934 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HDAC3O15379 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC15.98■□□□□ 0.15
HDAC3O15379 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 DIO3OS-208ENST00000556120 2473 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 SEMA4F-201ENST00000339773 2177 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 U82695.1-201ENST00000635752 1889 ntBASIC15.97■□□□□ 0.15
HDAC3O15379 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 AC006504.4-201ENST00000592118 1568 ntBASIC15.97■□□□□ 0.15
HDAC3O15379 RNASE4-203ENST00000555835 2520 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 RASGRP2-208ENST00000394428 444 ntTSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 ELK2BP-201ENST00000415014 1224 ntBASIC15.97■□□□□ 0.15
HDAC3O15379 LENG8-AS1-201ENST00000416022 582 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 ELFN1-201ENST00000424383 3845 ntAPPRIS P1 TSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 AC087388.1-201ENST00000571370 1112 ntBASIC15.97■□□□□ 0.15
HDAC3O15379 MCRIP1-211ENST00000576679 751 ntTSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC15.97■□□□□ 0.15
HDAC3O15379 NID2-208ENST00000617139 3827 ntTSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 AL355877.3-201ENST00000622820 899 ntBASIC15.97■□□□□ 0.15
HDAC3O15379 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 TSPOAP1-202ENST00000343736 5947 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 ARHGAP9-201ENST00000393791 2597 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.97■□□□□ 0.15
HDAC3O15379 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.97■□□□□ 0.15
HDAC3O15379 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 IRX6-201ENST00000290552 3128 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HDAC3O15379 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 BICD1-205ENST00000550207 1328 ntTSL 3 BASIC15.96■□□□□ 0.15
HDAC3O15379 AC008677.1-201ENST00000519230 1561 ntBASIC15.96■□□□□ 0.15
HDAC3O15379 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HDAC3O15379 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
HDAC3O15379 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HDAC3O15379 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HDAC3O15379 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.96■□□□□ 0.15
HDAC3O15379 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC15.96■□□□□ 0.15
HDAC3O15379 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 AL022314.1-201ENST00000414203 464 ntTSL 5 BASIC15.96■□□□□ 0.15
HDAC3O15379 CYHR1-203ENST00000424149 1162 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC15.96■□□□□ 0.15
HDAC3O15379 UBXN10-AS1-201ENST00000442226 510 ntTSL 2 BASIC15.96■□□□□ 0.15
HDAC3O15379 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.15
HDAC3O15379 LINC02237-202ENST00000521904 477 ntTSL 3 BASIC15.96■□□□□ 0.15
HDAC3O15379 SART3-203ENST00000546611 1184 ntBASIC15.96■□□□□ 0.15
HDAC3O15379 AC020658.6-201ENST00000623564 1870 ntBASIC15.96■□□□□ 0.15
HDAC3O15379 SLC37A1-201ENST00000352133 3664 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 PAN3-AS1-201ENST00000563843 1351 ntBASIC15.96■□□□□ 0.15
HDAC3O15379 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
HDAC3O15379 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
HDAC3O15379 CANX-201ENST00000247461 4260 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.14
HDAC3O15379 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC15.96■□□□□ 0.14
HDAC3O15379 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.14
HDAC3O15379 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.14
HDAC3O15379 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC15.96■□□□□ 0.14
HDAC3O15379 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC15.96■□□□□ 0.14
HDAC3O15379 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC15.96■□□□□ 0.14
HDAC3O15379 MC1R-202ENST00000555147 3099 ntAPPRIS P1 BASIC15.96■□□□□ 0.14
HDAC3O15379 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HDAC3O15379 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HDAC3O15379 LRRC47-201ENST00000378251 4310 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
HDAC3O15379 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
HDAC3O15379 NDUFB9-206ENST00000522532 1319 ntTSL 2 BASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms