Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 RN7SL828P-201ENST00000607615 303 ntBASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 CRELD1-201ENST00000326434 1994 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 RELA-227ENST00000615805 2236 ntTSL 5 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 DIABLO-206ENST00000443649 2250 ntAPPRIS P1 TSL 2 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 NEK3-206ENST00000611833 2345 ntAPPRIS ALT2 TSL 5 BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC14.54□□□□□ -0.08
CLCF1Q9UBD9 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 PRAG1-201ENST00000615670 4903 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DHX30-205ENST00000445061 4065 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 TMEM41A-201ENST00000296254 1060 ntTSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 OR52W1-201ENST00000311352 1114 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DBNDD2-205ENST00000372717 1207 ntTSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 VCX3A-201ENST00000381089 995 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 TSSK5P-201ENST00000423978 907 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 MTND6P24-201ENST00000440466 518 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AC004890.2-204ENST00000481968 304 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AL133215.2-201ENST00000609242 977 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 AL590560.3-201ENST00000623350 461 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 ELMSAN1-201ENST00000286523 8091 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 FLJ16779-201ENST00000612722 7638 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 CETN4P-206ENST00000642099 2168 ntBASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
CLCF1Q9UBD9 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 PML-215ENST00000565898 5393 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 PRDM1-203ENST00000369096 5164 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
CLCF1Q9UBD9 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 CALY-203ENST00000368558 825 ntTSL 5 BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 HNRNPA1P40-201ENST00000426371 1278 ntBASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 UGT1A2P-201ENST00000454886 866 ntBASIC14.52□□□□□ -0.09
CLCF1Q9UBD9 AL512638.1-201ENST00000457493 794 ntBASIC14.52□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms