Protein–RNA interactions for Protein: Q96RY7

IFT140, Intraflagellar transport protein 140 homolog, humanhuman

Predictions only

Length 1,462 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IFT140Q96RY7 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 FTLP1-201ENST00000449155 526 ntBASIC26.52■■□□□ 1.84
IFT140Q96RY7 SDHD-202ENST00000525291 790 ntTSL 3 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 AC138649.2-201ENST00000615886 705 ntBASIC26.52■■□□□ 1.84
IFT140Q96RY7 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 AL121723.1-201ENST00000445194 1519 ntBASIC26.52■■□□□ 1.84
IFT140Q96RY7 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC26.52■■□□□ 1.84
IFT140Q96RY7 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC26.52■■□□□ 1.84
IFT140Q96RY7 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC26.51■■□□□ 1.84
IFT140Q96RY7 AC098818.2-201ENST00000564925 2320 ntBASIC26.51■■□□□ 1.83
IFT140Q96RY7 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC26.51■■□□□ 1.83
IFT140Q96RY7 CYP46A4P-201ENST00000414953 267 ntBASIC26.51■■□□□ 1.83
IFT140Q96RY7 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC26.51■■□□□ 1.83
IFT140Q96RY7 NAT9-222ENST00000583476 583 ntTSL 3 BASIC26.51■■□□□ 1.83
IFT140Q96RY7 AP003419.4-201ENST00000616071 517 ntBASIC26.51■■□□□ 1.83
IFT140Q96RY7 PLEKHB2-211ENST00000628582 1297 ntTSL 2 BASIC26.51■■□□□ 1.83
IFT140Q96RY7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
IFT140Q96RY7 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
IFT140Q96RY7 ZDHHC9-202ENST00000371064 2473 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
IFT140Q96RY7 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC26.51■■□□□ 1.83
IFT140Q96RY7 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
IFT140Q96RY7 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC26.51■■□□□ 1.83
IFT140Q96RY7 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC26.5■■□□□ 1.83
IFT140Q96RY7 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC26.5■■□□□ 1.83
IFT140Q96RY7 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC26.5■■□□□ 1.83
IFT140Q96RY7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
IFT140Q96RY7 USP12-201ENST00000282344 4511 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 CD8B2-202ENST00000417670 633 ntBASIC26.49■■□□□ 1.83
IFT140Q96RY7 AL355334.1-201ENST00000417713 215 ntBASIC26.49■■□□□ 1.83
IFT140Q96RY7 SPTLC1P5-201ENST00000450718 252 ntBASIC26.49■■□□□ 1.83
IFT140Q96RY7 AC145423.3-201ENST00000615987 467 ntBASIC26.49■■□□□ 1.83
IFT140Q96RY7 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 PPP2R5A-201ENST00000261461 3128 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 TRIM13-201ENST00000356017 1637 ntAPPRIS ALT1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 ANXA8L1-208ENST00000622769 1861 ntTSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 PNRC1-203ENST00000369472 816 ntTSL 2 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 AC008267.1-201ENST00000474858 1069 ntBASIC26.49■■□□□ 1.83
IFT140Q96RY7 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC26.49■■□□□ 1.83
IFT140Q96RY7 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
IFT140Q96RY7 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 PRR19-201ENST00000341747 1530 ntAPPRIS P2 TSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 FOXP4-AS1-203ENST00000439386 404 ntTSL 3 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 ANKRD6-204ENST00000447838 2968 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 RNA5SP486-201ENST00000515961 83 ntBASIC26.48■■□□□ 1.83
IFT140Q96RY7 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 AP003419.2-201ENST00000543494 711 ntAPPRIS P1 TSL 3 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC26.48■■□□□ 1.83
IFT140Q96RY7 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 COX10-AS1-206ENST00000602743 576 ntTSL 5 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 CU633904.3-201ENST00000624042 1029 ntBASIC26.48■■□□□ 1.83
IFT140Q96RY7 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC26.48■■□□□ 1.83
IFT140Q96RY7 RDH13-202ENST00000396247 1987 ntTSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
IFT140Q96RY7 AP001790.1-201ENST00000511947 570 ntTSL 4 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC26.47■■□□□ 1.83
IFT140Q96RY7 FGFR3P5-201ENST00000564496 886 ntBASIC26.47■■□□□ 1.83
IFT140Q96RY7 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
Retrieved 100 of 98,524 protein–RNA pairs in 34.8 ms