Protein–RNA interactions for Protein: P78396

CCNA1, Cyclin-A1, humanhuman

Predictions only

Length 465 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNA1P78396 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.51■□□□□ 0.55
CCNA1P78396 MIR8072-201ENST00000614241 80 ntBASIC18.51■□□□□ 0.55
CCNA1P78396 AL033527.5-201ENST00000641382 801 ntBASIC18.51■□□□□ 0.55
CCNA1P78396 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCNA1P78396 AC005622.1-201ENST00000636801 1703 ntBASIC18.51■□□□□ 0.55
CCNA1P78396 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCNA1P78396 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.51■□□□□ 0.55
CCNA1P78396 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
CCNA1P78396 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC18.51■□□□□ 0.55
CCNA1P78396 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
CCNA1P78396 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC18.51■□□□□ 0.55
CCNA1P78396 CYP4F24P-201ENST00000586049 1580 ntBASIC18.51■□□□□ 0.55
CCNA1P78396 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC18.51■□□□□ 0.55
CCNA1P78396 SH2D2A-202ENST00000368199 1658 ntAPPRIS P3 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 PGAP3-203ENST00000378011 2533 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
CCNA1P78396 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNA1P78396 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 TMEM176B-202ENST00000429904 1206 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNA1P78396 AC022494.1-201ENST00000466044 728 ntBASIC18.5■□□□□ 0.55
CCNA1P78396 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 TSPAN11-204ENST00000546076 1058 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 AP005482.1-201ENST00000563722 1273 ntBASIC18.5■□□□□ 0.55
CCNA1P78396 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNA1P78396 PIGL-212ENST00000581006 554 ntTSL 4 BASIC18.5■□□□□ 0.55
CCNA1P78396 AC079336.1-201ENST00000583156 420 ntTSL 3 BASIC18.5■□□□□ 0.55
CCNA1P78396 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 FAM171B-202ENST00000612606 940 ntTSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
CCNA1P78396 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
CCNA1P78396 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 AMT-206ENST00000458307 1860 ntTSL 2 BASIC18.5■□□□□ 0.55
CCNA1P78396 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC18.49■□□□□ 0.55
CCNA1P78396 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCNA1P78396 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCNA1P78396 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC18.49■□□□□ 0.55
CCNA1P78396 HIST1H2BPS3-201ENST00000419683 341 ntBASIC18.49■□□□□ 0.55
CCNA1P78396 AC105940.2-201ENST00000421055 380 ntTSL 3 BASIC18.49■□□□□ 0.55
CCNA1P78396 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.49■□□□□ 0.55
CCNA1P78396 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 CLK3P2-201ENST00000427566 1453 ntBASIC18.49■□□□□ 0.55
CCNA1P78396 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC18.49■□□□□ 0.55
CCNA1P78396 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC18.49■□□□□ 0.55
CCNA1P78396 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
CCNA1P78396 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
CCNA1P78396 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
CCNA1P78396 NUDT10-202ENST00000376006 2001 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
CCNA1P78396 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
CCNA1P78396 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC18.48■□□□□ 0.55
CCNA1P78396 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCNA1P78396 PABPC1L-201ENST00000217073 1851 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCNA1P78396 ST8SIA5-201ENST00000315087 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 TRIM50-202ENST00000453152 1599 ntAPPRIS P1 TSL 2 BASIC18.48■□□□□ 0.55
CCNA1P78396 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC18.48■□□□□ 0.55
CCNA1P78396 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 PP12613-201ENST00000424958 2230 ntBASIC18.48■□□□□ 0.55
CCNA1P78396 CTHRC1-201ENST00000330295 1271 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 BOLA2P3-201ENST00000404566 256 ntBASIC18.48■□□□□ 0.55
CCNA1P78396 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNA1P78396 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC18.48■□□□□ 0.55
CCNA1P78396 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC18.48■□□□□ 0.55
CCNA1P78396 ORC6-206ENST00000568364 888 ntTSL 5 BASIC18.48■□□□□ 0.55
CCNA1P78396 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC18.48■□□□□ 0.55
CCNA1P78396 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC18.48■□□□□ 0.55
CCNA1P78396 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC18.48■□□□□ 0.55
CCNA1P78396 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms