Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.69□□□□□ -0.06
CLRN1P58418 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CLRN1P58418 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC14.69□□□□□ -0.06
CLRN1P58418 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC14.69□□□□□ -0.06
CLRN1P58418 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC14.69□□□□□ -0.06
CLRN1P58418 AC018695.7-201ENST00000624587 2492 ntBASIC14.69□□□□□ -0.06
CLRN1P58418 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN1P58418 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN1P58418 CLSTN1-201ENST00000361311 4647 ntAPPRIS P3 TSL 1 (best) BASIC14.69□□□□□ -0.06
CLRN1P58418 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC14.69□□□□□ -0.06
CLRN1P58418 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 MTHFR-217ENST00000641820 1569 ntBASIC14.68□□□□□ -0.06
CLRN1P58418 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC14.68□□□□□ -0.06
CLRN1P58418 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 AL513523.2-202ENST00000427283 2040 ntBASIC14.68□□□□□ -0.06
CLRN1P58418 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CLRN1P58418 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 AL359915.2-201ENST00000425884 745 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC14.68□□□□□ -0.06
CLRN1P58418 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 SLC25A1P1-201ENST00000528351 927 ntBASIC14.68□□□□□ -0.06
CLRN1P58418 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.68□□□□□ -0.06
CLRN1P58418 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 AC106730.1-201ENST00000566722 1090 ntBASIC14.68□□□□□ -0.06
CLRN1P58418 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 PAK2-201ENST00000327134 6139 ntAPPRIS P1 TSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CLRN1P58418 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 MAP3K1-201ENST00000399503 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC14.68□□□□□ -0.06
CLRN1P58418 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 PM20D2-201ENST00000275072 4708 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 CCDC90B-202ENST00000455220 1550 ntTSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 SERINC2-202ENST00000373710 2146 ntTSL 2 BASIC14.68□□□□□ -0.06
CLRN1P58418 PIK3R1-211ENST00000521381 7011 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC14.68□□□□□ -0.06
CLRN1P58418 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.68□□□□□ -0.06
CLRN1P58418 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 REM2-202ENST00000536884 1331 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 ATP2A3-205ENST00000397041 4675 ntAPPRIS P4 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 KMT2E-201ENST00000257745 6714 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 AC006449.6-201ENST00000612330 2296 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 ME2-201ENST00000321341 9415 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.67□□□□□ -0.06
CLRN1P58418 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC14.67□□□□□ -0.06
CLRN1P58418 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC14.67□□□□□ -0.06
CLRN1P58418 SUMO1-201ENST00000392244 831 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 SUMO1-209ENST00000409712 761 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC14.67□□□□□ -0.06
CLRN1P58418 AC140658.5-201ENST00000438532 169 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 KRT18P2-201ENST00000447938 1258 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 KRT18P3-201ENST00000451602 1288 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 AC109635.5-201ENST00000533593 962 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 PIN1-206ENST00000587625 878 ntTSL 2 BASIC14.67□□□□□ -0.06
CLRN1P58418 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.67□□□□□ -0.06
CLRN1P58418 AC140113.2-201ENST00000604370 208 ntBASIC14.67□□□□□ -0.06
CLRN1P58418 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC14.67□□□□□ -0.06
CLRN1P58418 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC14.67□□□□□ -0.06
CLRN1P58418 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC14.67□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms