Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 TIMM8BP1-201ENST00000452384 211 ntBASIC15.56■□□□□ 0.08
LIM2P55344 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.56■□□□□ 0.08
LIM2P55344 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC15.56■□□□□ 0.08
LIM2P55344 GATB-205ENST00000508611 605 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC15.56■□□□□ 0.08
LIM2P55344 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 AC104971.3-201ENST00000589794 335 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 AC004832.1-201ENST00000610936 1005 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC15.56■□□□□ 0.08
LIM2P55344 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 GALE-216ENST00000617979 1566 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 MTHFR-217ENST00000641820 1569 ntBASIC15.56■□□□□ 0.08
LIM2P55344 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 AC005622.1-201ENST00000636801 1703 ntBASIC15.56■□□□□ 0.08
LIM2P55344 EIF2B4-212ENST00000622434 1771 ntTSL 5 BASIC15.56■□□□□ 0.08
LIM2P55344 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC15.56■□□□□ 0.08
LIM2P55344 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC15.56■□□□□ 0.08
LIM2P55344 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC15.56■□□□□ 0.08
LIM2P55344 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
LIM2P55344 HEG1-201ENST00000311127 9156 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 SLC5A6-203ENST00000408041 2230 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
LIM2P55344 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC15.55■□□□□ 0.08
LIM2P55344 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
LIM2P55344 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC15.55■□□□□ 0.08
LIM2P55344 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 AC093724.1-201ENST00000448659 1027 ntBASIC15.55■□□□□ 0.08
LIM2P55344 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 AC079140.1-201ENST00000508039 487 ntBASIC15.55■□□□□ 0.08
LIM2P55344 PRYP6-201ENST00000514804 343 ntBASIC15.55■□□□□ 0.08
LIM2P55344 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC15.55■□□□□ 0.08
LIM2P55344 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.55■□□□□ 0.08
LIM2P55344 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 AL138918.1-201ENST00000568306 659 ntBASIC15.55■□□□□ 0.08
LIM2P55344 LINC00623-201ENST00000613486 486 ntTSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC15.55■□□□□ 0.08
LIM2P55344 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC15.55■□□□□ 0.08
LIM2P55344 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
LIM2P55344 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
LIM2P55344 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.54■□□□□ 0.08
LIM2P55344 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIM2P55344 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
LIM2P55344 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIM2P55344 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
LIM2P55344 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.54■□□□□ 0.08
LIM2P55344 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 38.5 ms