Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC15.48■□□□□ 0.07
SOX3P41225 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.48■□□□□ 0.07
SOX3P41225 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.48■□□□□ 0.07
SOX3P41225 LYRM1-209ENST00000568663 857 ntAPPRIS P1 TSL 4 BASIC15.48■□□□□ 0.07
SOX3P41225 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.48■□□□□ 0.07
SOX3P41225 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC15.48■□□□□ 0.07
SOX3P41225 AC079781.4-201ENST00000641908 219 ntBASIC15.48■□□□□ 0.07
SOX3P41225 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 AC024909.3-201ENST00000611513 2257 ntBASIC15.48■□□□□ 0.07
SOX3P41225 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 AC073957.2-201ENST00000549241 1562 ntTSL 4 BASIC15.48■□□□□ 0.07
SOX3P41225 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.48■□□□□ 0.07
SOX3P41225 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.48■□□□□ 0.07
SOX3P41225 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC15.48■□□□□ 0.07
SOX3P41225 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
SOX3P41225 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 ARFGAP1-220ENST00000547204 1327 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 EGFR-203ENST00000344576 2864 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC15.47■□□□□ 0.07
SOX3P41225 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
SOX3P41225 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
SOX3P41225 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 CHMP3-203ENST00000409225 1099 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 BSCL2-210ENST00000421906 1440 ntAPPRIS P3 TSL 5 BASIC15.47■□□□□ 0.07
SOX3P41225 AP006288.1-201ENST00000446065 395 ntBASIC15.47■□□□□ 0.07
SOX3P41225 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 ACTG1P14-201ENST00000446382 1122 ntBASIC15.47■□□□□ 0.07
SOX3P41225 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.47■□□□□ 0.07
SOX3P41225 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC15.47■□□□□ 0.07
SOX3P41225 AL596442.2-201ENST00000610240 980 ntBASIC15.47■□□□□ 0.07
SOX3P41225 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
SOX3P41225 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC15.47■□□□□ 0.07
SOX3P41225 AP001350.2-201ENST00000625104 1094 ntBASIC15.47■□□□□ 0.07
SOX3P41225 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 ADAM15-205ENST00000360674 2732 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC15.47■□□□□ 0.07
SOX3P41225 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
SOX3P41225 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 MDGA1-203ENST00000434837 10736 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
SOX3P41225 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 DNAH14-206ENST00000400952 1984 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC15.46■□□□□ 0.07
SOX3P41225 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 EIF6-202ENST00000374443 1017 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC15.46■□□□□ 0.07
SOX3P41225 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
SOX3P41225 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.46■□□□□ 0.07
SOX3P41225 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 HOPX-214ENST00000556614 1138 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 CYP2A7P1-201ENST00000595391 815 ntBASIC15.46■□□□□ 0.07
SOX3P41225 AP001160.2-201ENST00000596071 487 ntBASIC15.46■□□□□ 0.07
SOX3P41225 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 EDC3-202ENST00000426797 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 EFR3B-203ENST00000402191 3685 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.46■□□□□ 0.07
SOX3P41225 CHID1-201ENST00000323578 3374 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
SOX3P41225 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
SOX3P41225 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC15.46■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 29.9 ms