Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PAM16-215ENST00000577031 548 ntTSL 4 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 RNA5-8SN1-201ENST00000610460 153 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 RNA5-8SN5-202ENST00000612463 153 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 RNA5-8SN4-201ENST00000613359 153 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 RNA5-8SN5-201ENST00000619471 153 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 AL033527.5-202ENST00000641632 1098 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 AC063926.2-201ENST00000623766 1308 ntBASIC19.22■□□□□ 0.67
HLA-DOAP06340 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
HLA-DOAP06340 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC19.22■□□□□ 0.67
HLA-DOAP06340 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 KRTAP6-3-201ENST00000391624 636 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AP005018.1-201ENST00000525475 301 ntBASIC19.21■□□□□ 0.67
HLA-DOAP06340 LSM12-204ENST00000591247 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
HLA-DOAP06340 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
HLA-DOAP06340 UBALD1-205ENST00000590891 2641 ntBASIC19.21■□□□□ 0.66
HLA-DOAP06340 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 WNK1-206ENST00000535572 9886 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 DDHD1-201ENST00000323669 5503 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 WBP2-203ENST00000433525 928 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 AC044860.1-202ENST00000559481 777 ntBASIC19.2■□□□□ 0.66
HLA-DOAP06340 AL132655.2-201ENST00000596276 594 ntBASIC19.2■□□□□ 0.66
HLA-DOAP06340 MIR6069-201ENST00000620069 79 ntBASIC19.2■□□□□ 0.66
HLA-DOAP06340 AC025048.6-201ENST00000634326 1161 ntBASIC19.2■□□□□ 0.66
HLA-DOAP06340 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 AC012313.1-201ENST00000593393 3059 ntBASIC19.2■□□□□ 0.66
HLA-DOAP06340 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
HLA-DOAP06340 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
HLA-DOAP06340 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.19■□□□□ 0.66
HLA-DOAP06340 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
HLA-DOAP06340 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC19.19■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 60.9 ms