Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.28
HMGB3O15347 GTPBP4-202ENST00000360803 5075 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.28
HMGB3O15347 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 MCFD2-201ENST00000319466 4182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 CACNA1G-214ENST00000505165 6633 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.28
HMGB3O15347 BID-213ENST00000615414 2236 ntTSL 5 BASIC13.27□□□□□ -0.28
HMGB3O15347 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.27□□□□□ -0.29
HMGB3O15347 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 GPR35-203ENST00000407714 1258 ntAPPRIS P3 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 SLC25A48-204ENST00000433282 1111 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 AC007967.3-201ENST00000434308 558 ntBASIC13.27□□□□□ -0.29
HMGB3O15347 CD81-212ENST00000526072 1172 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 AC009061.1-201ENST00000567261 475 ntTSL 3 BASIC13.27□□□□□ -0.29
HMGB3O15347 AC111152.3-201ENST00000569699 673 ntBASIC13.27□□□□□ -0.29
HMGB3O15347 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 TNNT1-208ENST00000587465 1065 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 Z99916.2-201ENST00000604037 246 ntBASIC13.27□□□□□ -0.29
HMGB3O15347 AC097374.2-201ENST00000618617 1306 ntBASIC13.27□□□□□ -0.29
HMGB3O15347 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC13.27□□□□□ -0.29
HMGB3O15347 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 NKIRAS2-207ENST00000449471 1461 ntTSL 2 BASIC13.27□□□□□ -0.29
HMGB3O15347 PIR-202ENST00000380421 1539 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 TP73-211ENST00000604074 4806 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 ZNF497-201ENST00000311044 3468 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
HMGB3O15347 CDH24-202ENST00000397359 3552 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 SLC46A1-208ENST00000618626 5363 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 CARNMT1-202ENST00000376834 4130 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 ABHD16A-201ENST00000395952 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 SRC-202ENST00000373558 4304 ntTSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 IGSF1-204ENST00000370903 4594 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HMGB3O15347 SOGA1-201ENST00000237536 14371 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
HMGB3O15347 DPYSL5-201ENST00000288699 5209 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 NUP153-203ENST00000613258 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 AC009237.3-202ENST00000608013 3042 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 SPTB-202ENST00000389720 6321 ntTSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 SMIM24-201ENST00000215531 1329 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 PNPLA6-201ENST00000221249 4617 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 PDLIM7-202ENST00000355841 1689 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 HOGA1-202ENST00000370646 2488 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 IGHGP-201ENST00000390555 1178 ntBASIC13.26□□□□□ -0.29
HMGB3O15347 RPS9-203ENST00000391752 772 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 AMER3-202ENST00000423981 6172 ntAPPRIS P1 TSL 4 BASIC13.26□□□□□ -0.29
HMGB3O15347 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 DCUN1D4-203ENST00000451288 4269 ntTSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 AP003733.1-201ENST00000491725 852 ntBASIC13.26□□□□□ -0.29
HMGB3O15347 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 VEGFA-222ENST00000520948 1199 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 C6orf141-206ENST00000529246 1450 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
HMGB3O15347 LINC00937-207ENST00000544461 3033 ntTSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 AUTS2-217ENST00000611706 4583 ntTSL 5 BASIC13.26□□□□□ -0.29
HMGB3O15347 FAM87A-204ENST00000613235 858 ntBASIC13.26□□□□□ -0.29
HMGB3O15347 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC13.26□□□□□ -0.29
HMGB3O15347 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 ZNF296-202ENST00000622376 1631 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 USP24-201ENST00000294383 10549 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms