Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC092474.2-201ENST00000424288 719 ntBASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 ITGB5-AS1-201ENST00000495917 460 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 KRT19P2-202ENST00000557173 1012 ntBASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC084125.4-201ENST00000580385 338 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC011478.1-201ENST00000593140 554 ntTSL 4 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 MYOD1-201ENST00000250003 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 PHLDB1-202ENST00000361417 5753 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 REM2-202ENST00000536884 1331 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 IQSEC3-203ENST00000538872 7094 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS9D1Q9Y2B5 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 SLC30A5-202ENST00000396591 4360 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 REXO1L8P-201ENST00000604378 1897 ntBASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 ART5-201ENST00000359918 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC007834.1-201ENST00000446473 728 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC010181.2-201ENST00000483759 482 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AP000892.1-201ENST00000504906 488 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AF131215.3-201ENST00000532453 639 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 EMC4-208ENST00000559078 599 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 CD7-202ENST00000578509 925 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AL078644.1-201ENST00000609881 752 ntBASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC027601.4-201ENST00000611259 610 ntBASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 CYB561D1-205ENST00000430195 5077 ntTSL 2 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC16.36■□□□□ 0.21
VPS9D1Q9Y2B5 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 AL592424.1-201ENST00000563624 1536 ntBASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 CADPS2-204ENST00000412584 4308 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 HCFC1-201ENST00000310441 8869 ntAPPRIS P2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 ZAR1L-201ENST00000345108 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC16.35■□□□□ 0.21
VPS9D1Q9Y2B5 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC16.35■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 47.2 ms