Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AC009686.1-201ENST00000522494 364 ntTSL 3 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AC009486.1-201ENST00000569860 813 ntBASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AC090386.1-202ENST00000586610 469 ntTSL 3 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 COPS7A-204ENST00000534947 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 SLC22A17-204ENST00000397267 2455 ntAPPRIS P4 TSL 5 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 ATRIP-203ENST00000357105 2403 ntTSL 2 BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SMC1BQ8NDV3 WAC-202ENST00000347934 2839 ntTSL 5 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 NRSN2-202ENST00000382291 2088 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SLC23A3-203ENST00000409878 2010 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SOD2-206ENST00000452684 2045 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 HARS-202ENST00000415192 1401 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 BAATP1-201ENST00000412284 1225 ntBASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 AL591846.1-201ENST00000451736 433 ntBASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 AL139010.1-201ENST00000454878 894 ntBASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 ZNF890P-201ENST00000422060 1352 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 IQSEC2-202ENST00000396435 6015 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SMC1BQ8NDV3 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 TREX2-201ENST00000330912 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 GAS2L1P2-202ENST00000442849 2262 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 BAIAP2-204ENST00000428708 2095 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 SCGN-201ENST00000334979 704 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 CABP1-203ENST00000351200 770 ntAPPRIS ALT1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 AL451042.2-201ENST00000424774 904 ntTSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 PTK7-212ENST00000476760 902 ntTSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 HIST2H2BC-201ENST00000498492 580 ntBASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 LINC01585-201ENST00000500496 1295 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 CHMP4BP1-201ENST00000556017 588 ntBASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 BRI3BPP1-201ENST00000594224 787 ntBASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 KLK3-211ENST00000597483 810 ntTSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 AMT-232ENST00000636199 1546 ntTSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 MSLNL-201ENST00000442466 2109 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 MRPS21-201ENST00000581066 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
SMC1BQ8NDV3 CABIN1-202ENST00000337989 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 FIGNL2-202ENST00000618634 4812 ntAPPRIS P1 TSL 5 BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC19.27■□□□□ 0.68
SMC1BQ8NDV3 IMP3-201ENST00000314852 2028 ntAPPRIS P1 TSL 2 BASIC19.27■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms