Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 RGS6-218ENST00000556437 1689 ntAPPRIS ALT1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 PCDHA8-201ENST00000378123 2616 ntAPPRIS ALT2 BASIC21.21■□□□□ 0.99
COL18A1P39060 VILL-207ENST00000465644 1857 ntTSL 5 BASIC21.21■□□□□ 0.99
COL18A1P39060 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC21.21■□□□□ 0.99
COL18A1P39060 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
COL18A1P39060 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.21■□□□□ 0.99
COL18A1P39060 HEBP1-201ENST00000014930 1173 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL18A1P39060 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC21.2■□□□□ 0.99
COL18A1P39060 GOLGA2P4-201ENST00000441462 777 ntBASIC21.2■□□□□ 0.99
COL18A1P39060 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC21.2■□□□□ 0.99
COL18A1P39060 AC093433.1-201ENST00000458048 571 ntBASIC21.2■□□□□ 0.99
COL18A1P39060 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.99
COL18A1P39060 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC21.2■□□□□ 0.99
COL18A1P39060 OVOL1-AS1-202ENST00000532454 494 ntTSL 2 BASIC21.2■□□□□ 0.99
COL18A1P39060 LINC00658-206ENST00000600157 901 ntTSL 5 BASIC21.2■□□□□ 0.99
COL18A1P39060 AC097359.3-201ENST00000603982 1210 ntBASIC21.2■□□□□ 0.99
COL18A1P39060 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC21.2■□□□□ 0.99
COL18A1P39060 AGER-206ENST00000375070 1463 ntTSL 5 BASIC21.2■□□□□ 0.98
COL18A1P39060 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC21.2■□□□□ 0.98
COL18A1P39060 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC21.2■□□□□ 0.98
COL18A1P39060 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC21.2■□□□□ 0.98
COL18A1P39060 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 SMYD3-214ENST00000490107 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC21.2■□□□□ 0.98
COL18A1P39060 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 AC105020.1-201ENST00000435356 2205 ntBASIC21.2■□□□□ 0.98
COL18A1P39060 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
COL18A1P39060 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC21.2■□□□□ 0.98
COL18A1P39060 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 C1QBPP1-201ENST00000400117 770 ntBASIC21.2■□□□□ 0.98
COL18A1P39060 AC006033.1-201ENST00000440505 426 ntBASIC21.2■□□□□ 0.98
COL18A1P39060 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC21.2■□□□□ 0.98
COL18A1P39060 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC21.2■□□□□ 0.98
COL18A1P39060 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
COL18A1P39060 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 LOX-206ENST00000639739 1626 ntTSL 5 BASIC21.19■□□□□ 0.98
COL18A1P39060 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 AC017104.1-201ENST00000415129 720 ntTSL 3 BASIC21.19■□□□□ 0.98
COL18A1P39060 OLR1-203ENST00000432556 950 ntTSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.19■□□□□ 0.98
COL18A1P39060 Z98752.1-201ENST00000442482 518 ntTSL 3 BASIC21.19■□□□□ 0.98
COL18A1P39060 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC21.19■□□□□ 0.98
COL18A1P39060 AC010491.1-202ENST00000567048 528 ntTSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
COL18A1P39060 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC21.19■□□□□ 0.98
COL18A1P39060 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
COL18A1P39060 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
COL18A1P39060 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
COL18A1P39060 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 GPAA1P2-201ENST00000417923 928 ntBASIC21.18■□□□□ 0.98
COL18A1P39060 AC016694.1-201ENST00000434179 700 ntBASIC21.18■□□□□ 0.98
COL18A1P39060 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
COL18A1P39060 RPL13AP25-201ENST00000484130 612 ntBASIC21.18■□□□□ 0.98
COL18A1P39060 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC21.18■□□□□ 0.98
COL18A1P39060 CNGA4-202ENST00000533426 936 ntTSL 2 BASIC21.18■□□□□ 0.98
COL18A1P39060 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC21.18■□□□□ 0.98
COL18A1P39060 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 AL121723.1-201ENST00000445194 1519 ntBASIC21.18■□□□□ 0.98
COL18A1P39060 ZBTB45P2-201ENST00000452245 1531 ntBASIC21.18■□□□□ 0.98
COL18A1P39060 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
COL18A1P39060 KRT27-201ENST00000301656 1612 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC21.18■□□□□ 0.98
COL18A1P39060 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 GTF2H2-204ENST00000517900 659 ntTSL 5 BASIC21.18■□□□□ 0.98
COL18A1P39060 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
COL18A1P39060 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC21.18■□□□□ 0.98
COL18A1P39060 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC21.18■□□□□ 0.98
COL18A1P39060 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC21.18■□□□□ 0.98
COL18A1P39060 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
COL18A1P39060 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms