Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 KRT8-201ENST00000293308 1882 ntAPPRIS P1 TSL 5 BASIC21.5■■□□□ 1.03
HOXC9P31274 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 AC022210.1-201ENST00000449856 793 ntBASIC21.5■■□□□ 1.03
HOXC9P31274 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 POU5F1P6-201ENST00000466990 990 ntBASIC21.5■■□□□ 1.03
HOXC9P31274 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC21.5■■□□□ 1.03
HOXC9P31274 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC21.5■■□□□ 1.03
HOXC9P31274 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 BEND4-203ENST00000611697 1348 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 ELP5-202ENST00000356683 2197 ntTSL 5 BASIC21.5■■□□□ 1.03
HOXC9P31274 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC21.5■■□□□ 1.03
HOXC9P31274 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
HOXC9P31274 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC21.49■■□□□ 1.03
HOXC9P31274 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC21.49■■□□□ 1.03
HOXC9P31274 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 AC004987.2-201ENST00000395959 1148 ntBASIC21.49■■□□□ 1.03
HOXC9P31274 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC21.49■■□□□ 1.03
HOXC9P31274 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
HOXC9P31274 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC21.49■■□□□ 1.03
HOXC9P31274 MIR6805-201ENST00000615055 62 ntBASIC21.49■■□□□ 1.03
HOXC9P31274 NF2-208ENST00000403435 2568 ntTSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
HOXC9P31274 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC21.49■■□□□ 1.03
HOXC9P31274 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 TRPV4-207ENST00000541794 2475 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 SREBF2-209ENST00000612482 5365 ntTSL 5 BASIC21.48■■□□□ 1.03
HOXC9P31274 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 CLK3P2-201ENST00000427566 1453 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 CD300LG-206ENST00000588884 1459 ntAPPRIS ALT2 TSL 2 BASIC21.48■■□□□ 1.03
HOXC9P31274 BUD31-201ENST00000222969 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 MIR658-201ENST00000385210 100 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 AC074338.1-201ENST00000416825 156 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 AL031283.3-201ENST00000439788 727 ntTSL 3 BASIC21.48■■□□□ 1.03
HOXC9P31274 RPL13P2-201ENST00000440687 659 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC21.48■■□□□ 1.03
HOXC9P31274 AC119751.2-201ENST00000504529 210 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC21.48■■□□□ 1.03
HOXC9P31274 NEU3-203ENST00000529024 581 ntTSL 3 BASIC21.48■■□□□ 1.03
HOXC9P31274 SLC38A7-207ENST00000564391 731 ntTSL 2 BASIC21.48■■□□□ 1.03
HOXC9P31274 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC21.48■■□□□ 1.03
HOXC9P31274 SMIM22-202ENST00000586440 549 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC21.48■■□□□ 1.03
HOXC9P31274 AL512343.1-201ENST00000605837 169 ntBASIC21.48■■□□□ 1.03
HOXC9P31274 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC21.48■■□□□ 1.03
HOXC9P31274 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC21.48■■□□□ 1.03
HOXC9P31274 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC21.48■■□□□ 1.03
HOXC9P31274 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC21.48■■□□□ 1.03
HOXC9P31274 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC21.47■■□□□ 1.03
HOXC9P31274 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC21.47■■□□□ 1.03
HOXC9P31274 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.47■■□□□ 1.03
HOXC9P31274 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
HOXC9P31274 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.47■■□□□ 1.03
HOXC9P31274 RPS2P32-201ENST00000439199 892 ntBASIC21.47■■□□□ 1.03
HOXC9P31274 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC21.47■■□□□ 1.03
HOXC9P31274 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC21.47■■□□□ 1.03
HOXC9P31274 AC092552.1-201ENST00000547243 906 ntBASIC21.47■■□□□ 1.03
HOXC9P31274 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC21.47■■□□□ 1.03
HOXC9P31274 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
HOXC9P31274 AC008735.3-201ENST00000596646 500 ntBASIC21.47■■□□□ 1.03
HOXC9P31274 AL158212.4-201ENST00000624062 1286 ntBASIC21.47■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms