Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A1P12109 AC133539.2-201ENST00000604757 467 ntBASIC17.94■□□□□ 0.46
COL6A1P12109 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 AL139011.1-202ENST00000642063 584 ntBASIC17.94■□□□□ 0.46
COL6A1P12109 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC17.94■□□□□ 0.46
COL6A1P12109 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A1P12109 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 C2CD2L-201ENST00000336702 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A1P12109 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A1P12109 CROCCP2-202ENST00000412962 2773 ntBASIC17.94■□□□□ 0.46
COL6A1P12109 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL6A1P12109 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
COL6A1P12109 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC17.94■□□□□ 0.46
COL6A1P12109 ZSWIM4-201ENST00000254323 4339 ntAPPRIS P1 TSL 2 BASIC17.94■□□□□ 0.46
COL6A1P12109 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC17.93■□□□□ 0.46
COL6A1P12109 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A1P12109 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 MPV17-206ENST00000402722 827 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A1P12109 DMKN-204ENST00000408915 600 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A1P12109 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC17.93■□□□□ 0.46
COL6A1P12109 AP002490.2-201ENST00000524791 560 ntBASIC17.93■□□□□ 0.46
COL6A1P12109 AP001889.1-201ENST00000525414 633 ntBASIC17.93■□□□□ 0.46
COL6A1P12109 PLEKHA7-214ENST00000532079 565 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 IFI27L1-210ENST00000556381 804 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 AL132639.3-201ENST00000556537 530 ntTSL 4 BASIC17.93■□□□□ 0.46
COL6A1P12109 NDUFA4L2-206ENST00000556732 883 ntTSL 3 BASIC17.93■□□□□ 0.46
COL6A1P12109 AC243960.2-201ENST00000600996 747 ntBASIC17.93■□□□□ 0.46
COL6A1P12109 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A1P12109 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 NOC2LP2-201ENST00000407594 1944 ntBASIC17.93■□□□□ 0.46
COL6A1P12109 CD276-203ENST00000537340 2439 ntTSL 2 BASIC17.93■□□□□ 0.46
COL6A1P12109 Z97205.2-201ENST00000564697 1639 ntBASIC17.93■□□□□ 0.46
COL6A1P12109 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 INPP5J-213ENST00000620191 2306 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 MAN2A1-201ENST00000261483 4667 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
COL6A1P12109 MUTYH-234ENST00000528013 1662 ntTSL 5 BASIC17.93■□□□□ 0.46
COL6A1P12109 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A1P12109 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A1P12109 SCNN1A-205ENST00000396966 2336 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A1P12109 TP73-213ENST00000604479 1623 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A1P12109 KRTAP19-3-201ENST00000334063 522 ntAPPRIS P1 BASIC17.92■□□□□ 0.46
COL6A1P12109 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 GNB3-202ENST00000435982 1110 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.92■□□□□ 0.46
COL6A1P12109 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC17.92■□□□□ 0.46
COL6A1P12109 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
COL6A1P12109 AC036164.1-201ENST00000570544 333 ntBASIC17.92■□□□□ 0.46
COL6A1P12109 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC17.92■□□□□ 0.46
COL6A1P12109 AC020765.3-201ENST00000613051 740 ntBASIC17.92■□□□□ 0.46
COL6A1P12109 LINC02351-201ENST00000614728 289 ntTSL 2 BASIC17.92■□□□□ 0.46
COL6A1P12109 AL158212.4-201ENST00000624062 1286 ntBASIC17.92■□□□□ 0.46
COL6A1P12109 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC17.92■□□□□ 0.46
COL6A1P12109 EVI5L-201ENST00000270530 3855 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 CHRDL1-204ENST00000444321 1658 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
COL6A1P12109 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 BBS7-204ENST00000506636 2570 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 VIPR1-201ENST00000325123 2773 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC17.91■□□□□ 0.46
COL6A1P12109 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC17.91■□□□□ 0.46
COL6A1P12109 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A1P12109 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
COL6A1P12109 DBNDD1-206ENST00000568838 993 ntTSL 2 BASIC17.91■□□□□ 0.46
COL6A1P12109 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.91■□□□□ 0.46
COL6A1P12109 LINC01233-203ENST00000601708 494 ntTSL 3 BASIC17.91■□□□□ 0.46
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms