Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
PCDH9Q9HC56 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 SUPT20HL2-201ENST00000486479 2409 ntBASIC17■□□□□ 0.31
PCDH9Q9HC56 CLN3-216ENST00000565316 1318 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 ADAM9-206ENST00000481513 2387 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 ICOSLG-201ENST00000344330 1009 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 BEX3-201ENST00000361298 921 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 MED15P5-201ENST00000423150 992 ntBASIC17■□□□□ 0.31
PCDH9Q9HC56 AL591424.1-201ENST00000442569 1213 ntBASIC17■□□□□ 0.31
PCDH9Q9HC56 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC17■□□□□ 0.31
PCDH9Q9HC56 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 AC096734.2-201ENST00000562054 433 ntBASIC17■□□□□ 0.31
PCDH9Q9HC56 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC17■□□□□ 0.31
PCDH9Q9HC56 RPS15-207ENST00000591032 550 ntTSL 3 BASIC17■□□□□ 0.31
PCDH9Q9HC56 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 AC140113.2-201ENST00000604370 208 ntBASIC17■□□□□ 0.31
PCDH9Q9HC56 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC17■□□□□ 0.31
PCDH9Q9HC56 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC17■□□□□ 0.31
PCDH9Q9HC56 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC17■□□□□ 0.31
PCDH9Q9HC56 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 AMN1-201ENST00000281471 2110 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC17■□□□□ 0.31
PCDH9Q9HC56 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
PCDH9Q9HC56 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC17■□□□□ 0.31
PCDH9Q9HC56 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 ELOF1-203ENST00000586683 2154 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 ATP6V1C2-204ENST00000635370 1578 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 SFTPC-201ENST00000318561 997 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 FNDC11-202ENST00000370098 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 PIGU-202ENST00000374820 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 KRT18P2-201ENST00000447938 1258 ntBASIC16.99■□□□□ 0.31
PCDH9Q9HC56 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 FAM197Y3-203ENST00000618346 717 ntBASIC16.99■□□□□ 0.31
PCDH9Q9HC56 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 FEN1-201ENST00000305885 2296 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 SLC46A2-201ENST00000374228 2502 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 CCDC155-201ENST00000447857 2378 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
PCDH9Q9HC56 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
PCDH9Q9HC56 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms