Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 AC009292.1-201ENST00000502156 1986 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 TSPAN17-201ENST00000298564 2810 ntTSL 2 BASIC20.85■□□□□ 0.93
SHANK3Q9BYB0 B9D2-201ENST00000243578 1027 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AL355864.2-201ENST00000447420 863 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AP000812.2-201ENST00000538934 718 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 ZNF83-215ENST00000600714 810 ntTSL 3 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC107373.2-201ENST00000607735 490 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 STRN3-202ENST00000357479 2799 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 RHD-204ENST00000417538 1333 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC136604.1-201ENST00000418535 575 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 EMC4-209ENST00000559421 497 ntTSL 2 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC243960.2-201ENST00000600996 747 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC000095.1-201ENST00000603208 874 ntBASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
SHANK3Q9BYB0 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 LINC01144-201ENST00000626198 1710 ntBASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
SHANK3Q9BYB0 TMC6-203ENST00000392467 2833 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 BCRP2-202ENST00000447763 634 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 VDAC1P7-201ENST00000462417 847 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 BCRP6-201ENST00000510112 632 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 BCRP7-201ENST00000511549 544 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 AC100858.3-202ENST00000533496 553 ntTSL 4 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 AC243562.2-201ENST00000561247 970 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 CLUHP6-201ENST00000580789 941 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 NDUFV1-223ENST00000532303 1493 ntTSL 2 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 AC009053.2-201ENST00000563701 2365 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 AC105020.1-201ENST00000435356 2205 ntBASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 EPHX2-202ENST00000517536 1600 ntTSL 5 BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 ACTR2-205ENST00000542850 1429 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
SHANK3Q9BYB0 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 TREX1-201ENST00000433541 1105 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 RN7SL219P-201ENST00000582872 296 ntBASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 AL139099.5-201ENST00000635274 300 ntBASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 ZNF131-206ENST00000505606 3209 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC20.82■□□□□ 0.92
SHANK3Q9BYB0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 NRG2-205ENST00000361474 3020 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 BAG3-201ENST00000369085 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.81■□□□□ 0.92
SHANK3Q9BYB0 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms