Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 LITAF-209ENST00000571688 2632 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 RELA-227ENST00000615805 2236 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 BEND4-201ENST00000502486 8765 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 AKAP8P1-201ENST00000434743 1349 ntBASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 LINC01922-201ENST00000562582 719 ntBASIC12.71□□□□□ -0.37
CCDC140Q96MF4 MTDHP5-201ENST00000598980 586 ntBASIC12.71□□□□□ -0.37
CCDC140Q96MF4 C20orf181-201ENST00000623918 480 ntBASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 CACNA1A-253ENST00000637927 6847 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.37
CCDC140Q96MF4 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 BLK-205ENST00000529894 2017 ntTSL 5 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC12.71□□□□□ -0.38
CCDC140Q96MF4 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SYT3-202ENST00000593901 2836 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 AL671277.1-201ENST00000429656 993 ntBASIC12.7□□□□□ -0.38
CCDC140Q96MF4 RN7SL589P-201ENST00000481268 310 ntBASIC12.7□□□□□ -0.38
CCDC140Q96MF4 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 PCDHA1-201ENST00000378133 2726 ntBASIC12.7□□□□□ -0.38
CCDC140Q96MF4 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 GNAS-212ENST00000371098 1719 ntTSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 EPHA10-203ENST00000427468 3167 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
CCDC140Q96MF4 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.7□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms