Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDDC3Q8N4P3 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
HDDC3Q8N4P3 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 STRADA-254ENST00000640999 2336 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AIP-201ENST00000279146 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 MRPS18AP1-201ENST00000414458 589 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 GPR53P-205ENST00000457298 1084 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AL359815.1-201ENST00000457706 821 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 HLA-V-204ENST00000476601 1289 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AC105021.1-202ENST00000570572 669 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SRP9-204ENST00000619790 377 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SH2D3C-203ENST00000373277 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CROCCP1-201ENST00000426910 5675 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 GGT4P-201ENST00000623672 1708 ntBASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC16.45■□□□□ 0.22
HDDC3Q8N4P3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 CETN4P-206ENST00000642099 2168 ntBASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 CPEB2-201ENST00000259997 5612 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 PQLC2L-201ENST00000312275 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 GPHB5-201ENST00000314140 393 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 WFDC3-204ENST00000372632 704 ntTSL 3 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 AL589739.1-201ENST00000607720 493 ntBASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 HAUS2-211ENST00000639412 375 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 BICD2-201ENST00000356884 6427 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 KCNT1-202ENST00000371757 4717 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 LMX1B-204ENST00000561065 1300 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
HDDC3Q8N4P3 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 AC105020.1-201ENST00000435356 2205 ntBASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
HDDC3Q8N4P3 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms