Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.46■□□□□ 0.39
SOX4Q06945 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.46■□□□□ 0.39
SOX4Q06945 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC17.46■□□□□ 0.38
SOX4Q06945 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.45■□□□□ 0.38
SOX4Q06945 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 AL136982.4-201ENST00000437689 1740 ntBASIC17.45■□□□□ 0.38
SOX4Q06945 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 FAM207CP-201ENST00000443486 507 ntBASIC17.45■□□□□ 0.38
SOX4Q06945 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SOX4Q06945 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC17.45■□□□□ 0.38
SOX4Q06945 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX4Q06945 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC17.45■□□□□ 0.38
SOX4Q06945 AC010735.2-201ENST00000607970 584 ntTSL 4 BASIC17.45■□□□□ 0.38
SOX4Q06945 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 REXO1L8P-201ENST00000604378 1897 ntBASIC17.45■□□□□ 0.38
SOX4Q06945 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 OS9-205ENST00000413095 1660 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 HIBCH-201ENST00000359678 1939 ntAPPRIS P1 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC17.45■□□□□ 0.38
SOX4Q06945 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC17.45■□□□□ 0.38
SOX4Q06945 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC17.45■□□□□ 0.38
SOX4Q06945 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC17.45■□□□□ 0.38
SOX4Q06945 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX4Q06945 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC17.44■□□□□ 0.38
SOX4Q06945 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 IMPDH1P4-201ENST00000445028 1534 ntBASIC17.44■□□□□ 0.38
SOX4Q06945 AL592424.1-201ENST00000563624 1536 ntBASIC17.44■□□□□ 0.38
SOX4Q06945 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 PRDX5-202ENST00000347941 463 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 CIB3-202ENST00000379859 467 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX4Q06945 ARL6IP1-202ENST00000546206 1107 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX4Q06945 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC17.44■□□□□ 0.38
SOX4Q06945 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.44■□□□□ 0.38
SOX4Q06945 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 ARID5A-203ENST00000454558 3079 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.44■□□□□ 0.38
SOX4Q06945 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
SOX4Q06945 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 KCNQ2-207ENST00000370224 3004 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX4Q06945 RAB40C-205ENST00000539661 2609 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
SOX4Q06945 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.43■□□□□ 0.38
SOX4Q06945 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 EVPL-202ENST00000586740 6223 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC17.43■□□□□ 0.38
SOX4Q06945 COX20P2-201ENST00000452636 358 ntBASIC17.43■□□□□ 0.38
SOX4Q06945 C3orf14-202ENST00000462069 631 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
SOX4Q06945 TERF1P3-201ENST00000505638 1227 ntBASIC17.43■□□□□ 0.38
SOX4Q06945 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC17.43■□□□□ 0.38
SOX4Q06945 AC010336.2-201ENST00000564226 506 ntBASIC17.43■□□□□ 0.38
SOX4Q06945 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.43■□□□□ 0.38
SOX4Q06945 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC17.43■□□□□ 0.38
SOX4Q06945 AL365330.1-201ENST00000607459 531 ntBASIC17.43■□□□□ 0.38
SOX4Q06945 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC17.43■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 56.5 ms