Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 AL645608.8-201ENST00000606034 2086 ntBASIC20.3■□□□□ 0.84
COL5A3P25940 MOGAT3-202ENST00000379423 933 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
COL5A3P25940 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.3■□□□□ 0.84
COL5A3P25940 MTHFD2L-203ENST00000395759 2354 ntAPPRIS P2 TSL 5 BASIC20.3■□□□□ 0.84
COL5A3P25940 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A3P25940 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
COL5A3P25940 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC20.29■□□□□ 0.84
COL5A3P25940 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 FAM86HP-204ENST00000513466 959 ntBASIC20.29■□□□□ 0.84
COL5A3P25940 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A3P25940 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A3P25940 ATF5-205ENST00000600336 682 ntTSL 2 BASIC20.29■□□□□ 0.84
COL5A3P25940 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC20.29■□□□□ 0.84
COL5A3P25940 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
COL5A3P25940 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC20.29■□□□□ 0.84
COL5A3P25940 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
COL5A3P25940 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
COL5A3P25940 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
COL5A3P25940 SLCO6A1-201ENST00000379807 2437 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 POU5F1P6-201ENST00000466990 990 ntBASIC20.28■□□□□ 0.84
COL5A3P25940 AC022137.2-201ENST00000503482 481 ntBASIC20.28■□□□□ 0.84
COL5A3P25940 ROPN1B-210ENST00000514116 1088 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC20.28■□□□□ 0.84
COL5A3P25940 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC20.28■□□□□ 0.84
COL5A3P25940 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC20.28■□□□□ 0.84
COL5A3P25940 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
COL5A3P25940 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 VILL-207ENST00000465644 1857 ntTSL 5 BASIC20.28■□□□□ 0.84
COL5A3P25940 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC20.28■□□□□ 0.84
COL5A3P25940 CCDC88B-201ENST00000301897 870 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A3P25940 ISCA1-201ENST00000311534 813 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A3P25940 TEX30-203ENST00000376022 828 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A3P25940 BAATP1-201ENST00000412284 1225 ntBASIC20.27■□□□□ 0.84
COL5A3P25940 RPL13AP25-201ENST00000484130 612 ntBASIC20.27■□□□□ 0.84
COL5A3P25940 TIMM8B-201ENST00000504148 819 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A3P25940 RN7SL560P-201ENST00000577943 264 ntBASIC20.27■□□□□ 0.84
COL5A3P25940 AC084346.2-201ENST00000607097 949 ntBASIC20.27■□□□□ 0.84
COL5A3P25940 GCK-202ENST00000345378 2421 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A3P25940 CCDC3-201ENST00000378825 2731 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A3P25940 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A3P25940 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
COL5A3P25940 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
COL5A3P25940 HACE1-202ENST00000369125 3102 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A3P25940 FMNL1-201ENST00000328118 2330 ntTSL 2 BASIC20.27■□□□□ 0.84
COL5A3P25940 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.27■□□□□ 0.84
COL5A3P25940 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A3P25940 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A3P25940 AC026954.1-201ENST00000429771 1293 ntBASIC20.27■□□□□ 0.83
COL5A3P25940 AC007551.1-201ENST00000457394 519 ntBASIC20.27■□□□□ 0.83
COL5A3P25940 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC20.27■□□□□ 0.83
COL5A3P25940 KRT18P43-201ENST00000469825 1281 ntBASIC20.27■□□□□ 0.83
COL5A3P25940 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC20.27■□□□□ 0.83
COL5A3P25940 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A3P25940 IRF3-223ENST00000599223 1055 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A3P25940 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.83
COL5A3P25940 REXO1L8P-201ENST00000604378 1897 ntBASIC20.27■□□□□ 0.83
COL5A3P25940 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 AIFM1-202ENST00000319908 2248 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.26■□□□□ 0.83
COL5A3P25940 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 C1QBPP1-201ENST00000400117 770 ntBASIC20.26■□□□□ 0.83
COL5A3P25940 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 OLR1-203ENST00000432556 950 ntTSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 METTL26-214ENST00000614890 801 ntTSL 3 BASIC20.26■□□□□ 0.83
COL5A3P25940 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC20.26■□□□□ 0.83
COL5A3P25940 ZNF274-212ENST00000617501 2538 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC20.26■□□□□ 0.83
COL5A3P25940 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
COL5A3P25940 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms