Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 MATK-203ENST00000395045 2073 ntAPPRIS P4 TSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 FAM24B-202ENST00000368898 745 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 AC025181.2-201ENST00000606994 802 ntBASIC12.52□□□□□ -0.41
COL6A5A8TX70 AP001527.2-201ENST00000614441 631 ntBASIC12.52□□□□□ -0.41
COL6A5A8TX70 AL355312.1-201ENST00000407115 2176 ntBASIC12.52□□□□□ -0.41
COL6A5A8TX70 GGT2-201ENST00000401924 2366 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
COL6A5A8TX70 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
COL6A5A8TX70 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 LINC01660-203ENST00000618517 1859 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 C2orf81-202ENST00000612891 1902 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 DPM2-202ENST00000373110 738 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 CGB8-201ENST00000448456 882 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC078819.1-201ENST00000547454 765 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC012085.1-201ENST00000548270 765 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 NPM1P43-201ENST00000558669 786 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 DMAC2-208ENST00000589970 979 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AL133499.1-201ENST00000596207 608 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 DMAC2-215ENST00000597457 492 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 DGAT2L7P-201ENST00000602462 744 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC100757.4-201ENST00000626934 759 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 LGMN-201ENST00000334869 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 FBRS-202ENST00000356166 5200 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 C12orf73-207ENST00000549478 1446 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ACKR1-201ENST00000368121 1240 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AL139008.1-201ENST00000437894 228 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC098935.1-201ENST00000446057 611 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 VDAC1P7-201ENST00000462417 847 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 PPP2R1A-209ENST00000477989 444 ntTSL 3 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 CENPX-208ENST00000584347 799 ntTSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC011462.2-201ENST00000598887 344 ntTSL 5 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AC136475.1-202ENST00000602429 1151 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 AL805961.1-201ENST00000642026 753 ntBASIC12.51□□□□□ -0.41
COL6A5A8TX70 ZNF618-203ENST00000374126 3018 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
COL6A5A8TX70 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC12.51□□□□□ -0.41
COL6A5A8TX70 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 MORC4-201ENST00000255495 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL136982.4-201ENST00000437689 1740 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 KRT18P55-202ENST00000578578 1546 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 TISP43-201ENST00000409793 538 ntTSL 4 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL591684.1-201ENST00000434533 234 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AL136982.2-201ENST00000451760 234 ntTSL 5 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 TAPBP-241ENST00000489157 1299 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AC022217.1-201ENST00000521069 738 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 HNRNPA1P48-202ENST00000565308 961 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 AC018761.2-201ENST00000585496 296 ntTSL 3 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 FAM184A-201ENST00000338891 4141 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 TPRA1-204ENST00000450633 1865 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 GNAI2-207ENST00000451956 1486 ntTSL 2 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC12.5□□□□□ -0.41
COL6A5A8TX70 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
COL6A5A8TX70 CYP51A1P3-201ENST00000400072 1428 ntBASIC12.5□□□□□ -0.41
COL6A5A8TX70 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms