Protein–RNA interactions for Protein: Q9Y5H0

PCDHGA3, Protocadherin gamma-A3, humanhuman

Predictions only

Length 932 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA3Q9Y5H0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 OCIAD1-213ENST00000508293 1423 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 CAPN15-201ENST00000219611 4744 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 GTDC1-219ENST00000542155 2677 ntAPPRIS P1 TSL 2 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 SBNO2-204ENST00000587024 4861 ntAPPRIS ALT2 TSL 2 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 ACP5-212ENST00000592828 1699 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 SIL1-201ENST00000265195 1895 ntAPPRIS P1 TSL 5 BASIC16.08■□□□□ 0.16
PCDHGA3Q9Y5H0 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 RRAGD-202ENST00000369415 4900 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 USP45-201ENST00000327681 6255 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 KCNA5-201ENST00000252321 2800 ntAPPRIS P1 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AC092474.2-201ENST00000424288 719 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AC069262.1-201ENST00000539058 672 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 DUX4L17-201ENST00000557360 1267 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AL009183.1-201ENST00000603760 355 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AC084121.4-201ENST00000641598 221 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AF228730.8-201ENST00000642140 221 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AC012569.1-201ENST00000591191 1524 ntBASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AGXT-201ENST00000307503 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PCDHGA3Q9Y5H0 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ZBTB17-216ENST00000537142 2511 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 NGFR-202ENST00000504201 1840 ntTSL 2 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 AC003002.1-202ENST00000596755 1743 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 MBD4-202ENST00000393278 1684 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 NBEA-208ENST00000629018 10791 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 AL353732.1-201ENST00000569618 1459 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 HCG4-201ENST00000418983 998 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 FAM58DP-201ENST00000428076 619 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 SPCS2P4-201ENST00000436160 681 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 DUX4L27-201ENST00000554796 1261 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 MIR4745-201ENST00000577608 62 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 IL11-202ENST00000585513 1201 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 FOSB-211ENST00000592436 1057 ntTSL 5 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 AL390955.2-201ENST00000603032 514 ntBASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PCDHGA3Q9Y5H0 VIPR1-217ENST00000543411 2681 ntTSL 2 BASIC16.06■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 81.6 ms