Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 KRT8P49-201ENST00000604166 1432 ntBASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 ITGB1BP1-205ENST00000456913 1043 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 ITGB1BP1-216ENST00000488451 874 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 OR7E14P-202ENST00000530490 1290 ntBASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AL121912.1-201ENST00000603683 238 ntBASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AF228730.7-201ENST00000641842 219 ntBASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 KCNQ2-204ENST00000359125 3253 ntAPPRIS P4 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC39Q9UFE4 RNH1-204ENST00000397614 1864 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 CTD-3080P12.3-203ENST00000514376 1757 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 APLNR-203ENST00000611099 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 PRRT2-205ENST00000567659 1470 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 RPS2P1-201ENST00000434010 821 ntBASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 PAWRP1-201ENST00000451083 565 ntBASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 RNPS1P1-201ENST00000507437 918 ntBASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 RNPS1-222ENST00000567147 830 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 C4A-243ENST00000428956 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 C4B-202ENST00000435363 5460 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 TGFBR2-201ENST00000295754 4621 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 CCHCR1-202ENST00000396263 2490 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 PI4KAP1-204ENST00000612579 1703 ntBASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC39Q9UFE4 NFKBIA-201ENST00000216797 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 AC006504.4-201ENST00000592118 1568 ntBASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 NLRX1-202ENST00000409109 4092 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 ACTRT2-201ENST00000378404 1421 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 ME2P1-201ENST00000426028 1970 ntBASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 CDK1-204ENST00000448257 1948 ntAPPRIS ALT1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 SPAG1-202ENST00000388798 3852 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 FAM197Y8-203ENST00000450145 560 ntBASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 RPL19-204ENST00000579260 1051 ntAPPRIS ALT1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 HIST1H2AK-201ENST00000618958 393 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 ZFP41-201ENST00000330701 4797 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC39Q9UFE4 FAM45BP-202ENST00000592932 1624 ntBASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms