Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 TSPAN12-202ENST00000415871 1495 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 AL513523.2-202ENST00000427283 2040 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 YBX2P1-201ENST00000394192 760 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ADH5P3-201ENST00000433842 1137 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ALG1L5P-201ENST00000482043 771 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 IGHV3OR16-6-201ENST00000568775 360 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 U82695.1-201ENST00000635752 1889 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 RN7SL832P-201ENST00000607781 1756 ntBASIC12.73□□□□□ -0.37
CCDC140Q96MF4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ACE-204ENST00000428043 5120 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 NARF-206ENST00000457415 1668 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
CCDC140Q96MF4 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SYBU-230ENST00000532779 2765 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SP100-205ENST00000409824 1802 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 BSG-215ENST00000618006 1329 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 PRYP6-201ENST00000514804 343 ntBASIC12.72□□□□□ -0.37
CCDC140Q96MF4 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 AL135744.1-201ENST00000565098 629 ntBASIC12.72□□□□□ -0.37
CCDC140Q96MF4 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
CCDC140Q96MF4 AL592424.1-201ENST00000563624 1536 ntBASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 33.1 ms