Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHFRQ96EP1 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CHFRQ96EP1 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
CHFRQ96EP1 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
CHFRQ96EP1 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC16.66■□□□□ 0.26
CHFRQ96EP1 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHFRQ96EP1 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CHFRQ96EP1 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ALDH16A1-201ENST00000293350 3153 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AMT-206ENST00000458307 1860 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 MAPK11-201ENST00000330651 2431 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 SLC35B4-204ENST00000470969 1033 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 MRPL36-204ENST00000508987 686 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 SERF1B-208ENST00000515588 792 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 POLE2-203ENST00000553805 496 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AC132938.2-201ENST00000579188 680 ntBASIC16.65■□□□□ 0.26
CHFRQ96EP1 5S_rRNA.22-201ENST00000614916 106 ntBASIC16.65■□□□□ 0.26
CHFRQ96EP1 AL033527.5-202ENST00000641632 1098 ntBASIC16.65■□□□□ 0.26
CHFRQ96EP1 AL591163.1-201ENST00000641757 987 ntBASIC16.65■□□□□ 0.26
CHFRQ96EP1 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 UBE2O-201ENST00000319380 5436 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 WDR13-202ENST00000376729 5469 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 FAM111A-204ENST00000528737 6189 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ZSCAN10-202ENST00000538082 2350 ntTSL 4 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC16.65■□□□□ 0.26
CHFRQ96EP1 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CHFRQ96EP1 PHYHD1-202ENST00000353176 1374 ntTSL 5 BASIC16.64■□□□□ 0.26
CHFRQ96EP1 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
CHFRQ96EP1 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.26
CHFRQ96EP1 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC16.64■□□□□ 0.26
CHFRQ96EP1 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.64■□□□□ 0.26
CHFRQ96EP1 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 AL603756.1-201ENST00000606511 2163 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 AC098614.1-201ENST00000368528 745 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 AC079776.1-201ENST00000401540 1152 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 CD81-207ENST00000481687 890 ntTSL 2 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 GIMAP3P-201ENST00000495150 836 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 AP002490.2-201ENST00000524791 560 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 HILS1-202ENST00000545329 423 ntBASIC16.64■□□□□ 0.25
CHFRQ96EP1 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
CHFRQ96EP1 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 TMEM205-208ENST00000587948 688 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
CHFRQ96EP1 TMEM205-211ENST00000589555 788 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 29.4 ms