Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AGAP4-201ENST00000311652 2715 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 LYSMD4-203ENST00000378904 2122 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 KLHL23-201ENST00000272797 2087 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 ADCY3-201ENST00000260600 5050 ntAPPRIS P3 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 FAM53B-AS1-202ENST00000448422 1491 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AL021920.2-201ENST00000624828 1351 ntBASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SIGLEC10-204ENST00000436984 1776 ntTSL 2 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AC092978.1-202ENST00000637590 1327 ntBASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 CCDC17-209ENST00000528266 2181 ntAPPRIS P3 TSL 2 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 CYP2D6-204ENST00000389970 1714 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 CPLX2-202ENST00000393745 826 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 TMEM177-203ENST00000409951 1216 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 FNTAP2-201ENST00000430308 634 ntBASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AC091804.1-201ENST00000486888 567 ntBASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 TMEM205-216ENST00000593256 792 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 TUBB3-215ENST00000625617 570 ntTSL 4 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 HADH-212ENST00000638621 741 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
SMC1BQ8NDV3 SAMD11-214ENST00000618323 2159 ntTSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AC020916.1-201ENST00000587762 1774 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 NEU2-201ENST00000233840 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 B9D1-202ENST00000268841 755 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 PSTK-202ENST00000405485 1047 ntAPPRIS P2 TSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 RPL17P11-201ENST00000417593 544 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 TREML1-202ENST00000426005 981 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 Z93015.1-201ENST00000451718 390 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 BX284668.4-201ENST00000453917 508 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 SPAG5-AS1-203ENST00000554154 491 ntTSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AL359711.2-201ENST00000563105 872 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AC020914.3-201ENST00000594712 304 ntBASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 LINC00969-254ENST00000625358 962 ntTSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 NRXN1-209ENST00000405581 5078 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 AR-207ENST00000612010 3896 ntTSL 5 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 RGS9BP-201ENST00000334176 2894 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
SMC1BQ8NDV3 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 SPIN2A-201ENST00000374906 1319 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
SMC1BQ8NDV3 C9orf24-203ENST00000379126 496 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 MIR33B-201ENST00000385104 96 ntBASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 MEMO1-204ENST00000407893 682 ntTSL 5 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 AL160290.2-201ENST00000448347 831 ntTSL 3 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 AC004898.1-201ENST00000451057 766 ntBASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 FGFR1OP2-206ENST00000546072 956 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 LINC00854-216ENST00000636331 718 ntAPPRIS P5 TSL 5 BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SMC1BQ8NDV3 NPEPL1-203ENST00000525817 1780 ntTSL 2 BASIC19.33■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 53.8 ms