Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 ZNF324-203ENST00000536459 5653 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 BTBD11-205ENST00000490090 4614 ntTSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 BANP-204ENST00000393208 2283 ntTSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.76■□□□□ 0.43
KRT39Q6A163 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
KRT39Q6A163 MKNK2P1-201ENST00000437526 628 ntBASIC17.76■□□□□ 0.43
KRT39Q6A163 ACTG1P14-201ENST00000446382 1122 ntBASIC17.76■□□□□ 0.43
KRT39Q6A163 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 FAM86C2P-203ENST00000528684 1004 ntBASIC17.76■□□□□ 0.43
KRT39Q6A163 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC17.76■□□□□ 0.43
KRT39Q6A163 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 CITED2-204ENST00000618718 901 ntTSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC17.76■□□□□ 0.43
KRT39Q6A163 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 LINC02381-201ENST00000508564 1369 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.76■□□□□ 0.43
KRT39Q6A163 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
KRT39Q6A163 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 BSG-215ENST00000618006 1329 ntTSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 TNKS-211ENST00000520408 1964 ntTSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 NARF-206ENST00000457415 1668 ntTSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 AL391005.1-201ENST00000623953 2435 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 ROMO1-201ENST00000336695 496 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 TFAMP1-201ENST00000412727 736 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 ADH5P3-201ENST00000433842 1137 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 PRYP6-201ENST00000514804 343 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.75■□□□□ 0.43
KRT39Q6A163 AL135744.1-201ENST00000565098 629 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC17.75■□□□□ 0.43
KRT39Q6A163 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 AC026691.1-201ENST00000602502 2017 ntBASIC17.75■□□□□ 0.43
KRT39Q6A163 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
KRT39Q6A163 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 RELA-227ENST00000615805 2236 ntTSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
KRT39Q6A163 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
KRT39Q6A163 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
KRT39Q6A163 TRIP6-209ENST00000619988 1303 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 AL513523.2-202ENST00000427283 2040 ntBASIC17.74■□□□□ 0.43
KRT39Q6A163 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
KRT39Q6A163 FIGLA-201ENST00000332372 722 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
KRT39Q6A163 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
KRT39Q6A163 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms