Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 ACTN3-203ENST00000513398 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC15.54■□□□□ 0.08
COL5A1P20908 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.54■□□□□ 0.08
COL5A1P20908 AC124287.1-201ENST00000582249 838 ntTSL 3 BASIC15.54■□□□□ 0.08
COL5A1P20908 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC15.54■□□□□ 0.08
COL5A1P20908 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
COL5A1P20908 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.54■□□□□ 0.08
COL5A1P20908 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 TUBB1P2-201ENST00000422712 1306 ntBASIC15.54■□□□□ 0.08
COL5A1P20908 TUBB1P1-201ENST00000503144 1300 ntBASIC15.54■□□□□ 0.08
COL5A1P20908 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
COL5A1P20908 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 AL391256.1-201ENST00000443260 1855 ntBASIC15.53■□□□□ 0.08
COL5A1P20908 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 UVSSA-208ENST00000511563 1494 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC15.53■□□□□ 0.08
COL5A1P20908 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC15.53■□□□□ 0.08
COL5A1P20908 AC005229.1-201ENST00000392885 409 ntBASIC15.53■□□□□ 0.08
COL5A1P20908 NUDT1-206ENST00000397049 714 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 RN7SL399P-201ENST00000471648 279 ntBASIC15.53■□□□□ 0.08
COL5A1P20908 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC15.53■□□□□ 0.08
COL5A1P20908 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC15.53■□□□□ 0.08
COL5A1P20908 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 HNRNPA1P48-201ENST00000562726 1377 ntBASIC15.53■□□□□ 0.08
COL5A1P20908 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC15.53■□□□□ 0.08
COL5A1P20908 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.53■□□□□ 0.08
COL5A1P20908 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.53■□□□□ 0.08
COL5A1P20908 SEPT8-216ENST00000620483 4335 ntTSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 TMEM130-202ENST00000345589 2261 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 ADAMTS4-201ENST00000367995 1961 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 LBX2-201ENST00000341396 886 ntTSL 3 BASIC15.52■□□□□ 0.08
COL5A1P20908 APOC3-202ENST00000375345 604 ntTSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.52■□□□□ 0.08
COL5A1P20908 LNCPRESS1-201ENST00000429254 756 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC15.52■□□□□ 0.08
COL5A1P20908 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.08
COL5A1P20908 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC15.52■□□□□ 0.08
COL5A1P20908 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC15.52■□□□□ 0.08
COL5A1P20908 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
COL5A1P20908 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
COL5A1P20908 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC15.52■□□□□ 0.07
COL5A1P20908 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC15.52■□□□□ 0.07
COL5A1P20908 FLVCR1-AS1-201ENST00000356684 2525 ntTSL 2 BASIC15.52■□□□□ 0.07
COL5A1P20908 CADM3-201ENST00000368124 2546 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
COL5A1P20908 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.52■□□□□ 0.07
COL5A1P20908 WDFY4-202ENST00000360890 2193 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms