Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC16.13■□□□□ 0.17
SIX3O95343 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.13■□□□□ 0.17
SIX3O95343 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 MYB-201ENST00000316528 3571 ntTSL 5 BASIC16.13■□□□□ 0.17
SIX3O95343 MYB-241ENST00000616088 3573 ntTSL 5 BASIC16.13■□□□□ 0.17
SIX3O95343 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SIX3O95343 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
SIX3O95343 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
SIX3O95343 SH2B1-201ENST00000322610 3095 ntTSL 2 BASIC16.13■□□□□ 0.17
SIX3O95343 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 CDK11B-204ENST00000407249 2677 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 MAP3K11-201ENST00000309100 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 LONRF1-201ENST00000398246 3594 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 RBFA-202ENST00000306735 1407 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 PTH2-201ENST00000270631 459 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 MAL-203ENST00000353004 873 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 HMGA1P7-201ENST00000406908 502 ntBASIC16.12■□□□□ 0.17
SIX3O95343 AC108751.1-201ENST00000490852 363 ntBASIC16.12■□□□□ 0.17
SIX3O95343 CXCL1P1-201ENST00000502804 216 ntBASIC16.12■□□□□ 0.17
SIX3O95343 MTRF1LP2-201ENST00000506027 1122 ntBASIC16.12■□□□□ 0.17
SIX3O95343 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.12■□□□□ 0.17
SIX3O95343 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 TMEM41B-203ENST00000527813 803 ntTSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 AP002469.2-201ENST00000531724 424 ntBASIC16.12■□□□□ 0.17
SIX3O95343 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 MIR4515-201ENST00000584082 81 ntBASIC16.12■□□□□ 0.17
SIX3O95343 AC104692.2-201ENST00000603054 253 ntBASIC16.12■□□□□ 0.17
SIX3O95343 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 AC243547.2-201ENST00000616257 234 ntTSL 3 BASIC16.12■□□□□ 0.17
SIX3O95343 AC087645.4-201ENST00000638890 792 ntTSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
SIX3O95343 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.12■□□□□ 0.17
SIX3O95343 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
SIX3O95343 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 PLXND1-201ENST00000324093 7094 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.11■□□□□ 0.17
SIX3O95343 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 AL031284.1-201ENST00000419297 478 ntBASIC16.11■□□□□ 0.17
SIX3O95343 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC16.11■□□□□ 0.17
SIX3O95343 AC098831.1-202ENST00000438821 336 ntBASIC16.11■□□□□ 0.17
SIX3O95343 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 POLD4-207ENST00000531239 584 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 AC092115.3-201ENST00000575838 592 ntTSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC16.11■□□□□ 0.17
SIX3O95343 AL773604.1-201ENST00000617417 272 ntBASIC16.11■□□□□ 0.17
SIX3O95343 SLC9A6-203ENST00000370701 4755 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
SIX3O95343 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.11■□□□□ 0.17
SIX3O95343 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC16.11■□□□□ 0.17
SIX3O95343 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms