Protein–RNA interactions for Protein: H3BSU7

TMX2-CTNND1, TMX2-CTNND1 readthrough (NMD candidate), humanhuman

Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TMX2-CTNND1H3BSU7 NQO2-203ENST00000380441 1021 ntTSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC109635.5-201ENST00000533593 962 ntBASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC190387.1-201ENST00000551683 408 ntBASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 ASB10-201ENST00000275838 1820 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 COTL1-203ENST00000564057 1677 ntTSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.23■□□□□ 0.19
TMX2-CTNND1H3BSU7 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 TUBB3P1-201ENST00000405796 1332 ntBASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 IGLL5-203ENST00000532223 1335 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 STT3B-201ENST00000295770 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC133963.1-201ENST00000504166 1679 ntBASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 EWSR1-203ENST00000332050 2552 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 HMGA1P7-201ENST00000406908 502 ntBASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 LHX6-205ENST00000464484 666 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 PMF1-BGLAP-204ENST00000567140 655 ntTSL 3 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL009183.1-201ENST00000603760 355 ntBASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 MFSD1-202ENST00000392813 2244 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC105917.1-201ENST00000506637 2539 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC055876.3-201ENST00000431496 288 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC093214.1-201ENST00000511688 1107 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC064807.1-203ENST00000520357 575 ntTSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 DUX4L17-201ENST00000557360 1267 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC051619.7-201ENST00000568314 623 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC239800.4-201ENST00000603712 296 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AC138649.4-201ENST00000612222 287 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 AP001350.2-201ENST00000625104 1094 ntBASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 POM121C-206ENST00000607367 3690 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 ZNF286A-204ENST00000464847 5616 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 SCARB2-201ENST00000264896 4792 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 TNFRSF10A-201ENST00000221132 2714 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 CYP4F11-203ENST00000402119 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 MX1-210ENST00000455164 2810 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
TMX2-CTNND1H3BSU7 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 AC005915.1-201ENST00000624912 2018 ntBASIC16.21■□□□□ 0.18
TMX2-CTNND1H3BSU7 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms