Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 KRT8P48-201ENST00000515599 1220 ntBASIC16.39■□□□□ 0.21
VPS35Q96QK1 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AC022145.2-201ENST00000598203 171 ntBASIC16.39■□□□□ 0.21
VPS35Q96QK1 AC006538.3-201ENST00000612495 578 ntBASIC16.39■□□□□ 0.21
VPS35Q96QK1 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 GCK-202ENST00000345378 2421 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 AL079303.2-201ENST00000555107 2613 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 ETFA-203ENST00000557943 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS35Q96QK1 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS35Q96QK1 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 MEST-202ENST00000341441 2443 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 PCGF3-213ENST00000620529 1899 ntBASIC16.38■□□□□ 0.21
VPS35Q96QK1 C12orf40-202ENST00000405531 1656 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 TIMM8BP1-201ENST00000452384 211 ntBASIC16.38■□□□□ 0.21
VPS35Q96QK1 AL391335.1-201ENST00000504583 535 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 AC079140.1-201ENST00000508039 487 ntBASIC16.38■□□□□ 0.21
VPS35Q96QK1 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 AC008267.7-201ENST00000624570 1194 ntBASIC16.38■□□□□ 0.21
VPS35Q96QK1 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 LINC01144-201ENST00000626198 1710 ntBASIC16.38■□□□□ 0.21
VPS35Q96QK1 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS35Q96QK1 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS35Q96QK1 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SYVN1-203ENST00000377190 3052 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SLK-201ENST00000335753 7673 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 ARMC12-201ENST00000288065 1169 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 RNF34-208ENST00000555076 593 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 KRT8P23-201ENST00000560090 1207 ntBASIC16.37■□□□□ 0.21
VPS35Q96QK1 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 AC073389.1-201ENST00000595595 795 ntBASIC16.37■□□□□ 0.21
VPS35Q96QK1 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 AC079781.4-201ENST00000641908 219 ntBASIC16.37■□□□□ 0.21
VPS35Q96QK1 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 DARS-201ENST00000264161 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS35Q96QK1 ZBTB10-203ENST00000430430 10132 ntAPPRIS P3 TSL 5 BASIC16.37■□□□□ 0.21
VPS35Q96QK1 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms