Protein–RNA interactions for Protein: Q96CG8

CTHRC1, Collagen triple helix repeat-containing protein 1, humanhuman

Predictions only

Length 243 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTHRC1Q96CG8 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CTHRC1Q96CG8 PTPRJ-207ENST00000613246 7851 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
CTHRC1Q96CG8 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 PPP3CA-201ENST00000323055 4519 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 AC069335.1-201ENST00000489972 472 ntBASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 EIF5A-206ENST00000571955 1366 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
CTHRC1Q96CG8 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 CDC73-201ENST00000367435 4969 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 KLHDC10-201ENST00000335420 6437 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 AC004461.1-201ENST00000412461 403 ntBASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 AL592309.1-201ENST00000443127 649 ntBASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 RAB7A-204ENST00000483906 533 ntTSL 3 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 SEC24B-AS1-201ENST00000499359 957 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 SEC24B-AS1-204ENST00000510971 554 ntTSL 4 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 AP000344.2-201ENST00000512987 629 ntBASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 RPS3A-212ENST00000514682 985 ntTSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 BLK-205ENST00000529894 2017 ntTSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.22■□□□□ 0.03
CTHRC1Q96CG8 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 PCSK4-201ENST00000300954 2661 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 METTL26-202ENST00000338401 544 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 FAM220BP-201ENST00000377689 816 ntBASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 AC211486.1-202ENST00000416371 468 ntBASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 AC245100.5-201ENST00000452108 331 ntBASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 AL355140.1-201ENST00000457328 398 ntTSL 5 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 AC211476.1-201ENST00000503899 468 ntBASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 FAM172A-207ENST00000509739 1031 ntTSL 2 BASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 IGHV3-62-201ENST00000520057 340 ntBASIC15.21■□□□□ 0.03
CTHRC1Q96CG8 CCND1-203ENST00000536559 553 ntTSL 3 BASIC15.21■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 47.5 ms