Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 UBE2Q2-208ENST00000569423 2969 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 MCOLN1-201ENST00000264079 2082 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 IL2RG-202ENST00000374188 1432 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 SH3GLB2-205ENST00000416629 1415 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 LINC01819-201ENST00000422351 2156 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 CHEK1-202ENST00000427383 1670 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 OTUD5-204ENST00000428668 1493 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 HNRNPA1P48-201ENST00000562726 1377 ntBASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ZNF180-204ENST00000586637 1023 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 KRT8P49-201ENST00000604166 1432 ntBASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 PRKN-211ENST00000615065 261 ntTSL 5 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 AL008638.5-201ENST00000623814 1298 ntBASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 GRN-222ENST00000639447 1314 ntTSL 2 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC19.38■□□□□ 0.69
SMC1BQ8NDV3 ADRA1A-206ENST00000380586 2304 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 F12-201ENST00000253496 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 LSM10-201ENST00000315732 850 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 RGS10-202ENST00000369103 804 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 ENPP7P5-201ENST00000541031 1031 ntBASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 AC009133.1-202ENST00000563806 494 ntTSL 3 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 CLUH-201ENST00000435359 5224 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 RAB39A-201ENST00000320578 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 AC007613.1-201ENST00000572811 2597 ntBASIC19.37■□□□□ 0.69
SMC1BQ8NDV3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC135776.1-201ENST00000319817 2481 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 ZDHHC4-205ENST00000396713 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 RFTN1-201ENST00000334133 2982 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 REXO1L9P-201ENST00000604264 2108 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 RPS3-201ENST00000278572 907 ntTSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 BEX2-202ENST00000372677 899 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 HIST1H2AH-201ENST00000377459 387 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC025048.3-201ENST00000590609 569 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 AC005702.4-201ENST00000618393 416 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 ZNF302-214ENST00000613363 2893 ntAPPRIS ALT2 TSL 4 BASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 HLA-DQB1-201ENST00000374943 1656 ntBASIC19.36■□□□□ 0.69
SMC1BQ8NDV3 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 55.5 ms