Protein–RNA interactions for Protein: Q6A163

KRT39, Keratin, type I cytoskeletal 39, humanhuman

Predictions only

Length 491 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT39Q6A163 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 QPRT-203ENST00000562473 579 ntTSL 3 BASIC17.79■□□□□ 0.44
KRT39Q6A163 ZPBP2-204ENST00000584588 1277 ntTSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC17.79■□□□□ 0.44
KRT39Q6A163 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 AC092902.6-201ENST00000641783 218 ntBASIC17.79■□□□□ 0.44
KRT39Q6A163 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC17.79■□□□□ 0.44
KRT39Q6A163 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC17.79■□□□□ 0.44
KRT39Q6A163 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 U82695.1-201ENST00000635752 1889 ntBASIC17.79■□□□□ 0.44
KRT39Q6A163 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
KRT39Q6A163 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC17.79■□□□□ 0.44
KRT39Q6A163 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
KRT39Q6A163 AC073439.1-201ENST00000624121 1774 ntBASIC17.79■□□□□ 0.44
KRT39Q6A163 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC17.79■□□□□ 0.44
KRT39Q6A163 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC17.78■□□□□ 0.44
KRT39Q6A163 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
KRT39Q6A163 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 LETM2-205ENST00000519476 2240 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 AL355306.1-201ENST00000415580 579 ntBASIC17.78■□□□□ 0.44
KRT39Q6A163 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC17.78■□□□□ 0.44
KRT39Q6A163 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC17.78■□□□□ 0.44
KRT39Q6A163 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 C20orf181-201ENST00000623918 480 ntBASIC17.78■□□□□ 0.44
KRT39Q6A163 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
KRT39Q6A163 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 JADE3-204ENST00000614628 4934 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC17.78■□□□□ 0.44
KRT39Q6A163 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC17.78■□□□□ 0.44
KRT39Q6A163 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC17.78■□□□□ 0.44
KRT39Q6A163 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
KRT39Q6A163 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 AKAP8P1-201ENST00000434743 1349 ntBASIC17.77■□□□□ 0.44
KRT39Q6A163 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.44
KRT39Q6A163 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 YBX2P1-201ENST00000394192 760 ntBASIC17.77■□□□□ 0.44
KRT39Q6A163 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC17.77■□□□□ 0.44
KRT39Q6A163 AL671277.1-201ENST00000429656 993 ntBASIC17.77■□□□□ 0.44
KRT39Q6A163 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 IGHV3OR16-6-201ENST00000568775 360 ntBASIC17.77■□□□□ 0.44
KRT39Q6A163 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC17.77■□□□□ 0.44
KRT39Q6A163 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
KRT39Q6A163 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC17.77■□□□□ 0.44
KRT39Q6A163 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC17.77■□□□□ 0.44
KRT39Q6A163 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC17.77■□□□□ 0.44
KRT39Q6A163 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.44
KRT39Q6A163 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC17.77■□□□□ 0.44
KRT39Q6A163 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 BTN3A1-204ENST00000425234 1882 ntTSL 2 BASIC17.77■□□□□ 0.43
KRT39Q6A163 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC17.77■□□□□ 0.43
KRT39Q6A163 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 BBS2-218ENST00000568104 2623 ntTSL 5 BASIC17.77■□□□□ 0.43
KRT39Q6A163 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.77■□□□□ 0.43
KRT39Q6A163 AL592424.1-201ENST00000563624 1536 ntBASIC17.77■□□□□ 0.43
KRT39Q6A163 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC17.77■□□□□ 0.43
KRT39Q6A163 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 AL596087.1-201ENST00000400979 1969 ntBASIC17.77■□□□□ 0.43
KRT39Q6A163 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
KRT39Q6A163 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.77■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms