Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 AC011676.5-201ENST00000624864 2660 ntBASIC19.84■□□□□ 0.77
COL4A1P02462 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 MATN3-201ENST00000407540 2524 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 CD81-201ENST00000263645 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 FAM104B-202ENST00000358460 1179 ntAPPRIS P3 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 MIR658-201ENST00000385210 100 ntBASIC19.84■□□□□ 0.77
COL4A1P02462 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 ORC6-206ENST00000568364 888 ntTSL 5 BASIC19.84■□□□□ 0.77
COL4A1P02462 AL365330.1-201ENST00000607459 531 ntBASIC19.84■□□□□ 0.77
COL4A1P02462 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC19.84■□□□□ 0.77
COL4A1P02462 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
COL4A1P02462 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL4A1P02462 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC19.83■□□□□ 0.77
COL4A1P02462 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.83■□□□□ 0.77
COL4A1P02462 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A1P02462 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A1P02462 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC19.83■□□□□ 0.77
COL4A1P02462 AC020915.1-201ENST00000413518 1469 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.77
COL4A1P02462 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.77
COL4A1P02462 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.77
COL4A1P02462 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC19.83■□□□□ 0.77
COL4A1P02462 TMEM91-202ENST00000356385 944 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 RPL13P2-201ENST00000440687 659 ntBASIC19.83■□□□□ 0.76
COL4A1P02462 HMGB2-203ENST00000446922 1175 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 FADS2-205ENST00000517839 469 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A1P02462 BRF2-202ENST00000520601 1192 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A1P02462 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A1P02462 AC006064.3-201ENST00000537921 477 ntTSL 4 BASIC19.83■□□□□ 0.76
COL4A1P02462 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC19.83■□□□□ 0.76
COL4A1P02462 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC19.83■□□□□ 0.76
COL4A1P02462 PAM16-204ENST00000571941 674 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A1P02462 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC19.83■□□□□ 0.76
COL4A1P02462 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC19.83■□□□□ 0.76
COL4A1P02462 NF2-208ENST00000403435 2568 ntTSL 5 BASIC19.83■□□□□ 0.76
COL4A1P02462 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC19.83■□□□□ 0.76
COL4A1P02462 FKBP8-201ENST00000222308 1710 ntAPPRIS ALT1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 ADAM22-202ENST00000398201 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
COL4A1P02462 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL4A1P02462 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC19.82■□□□□ 0.76
COL4A1P02462 FZD10-202ENST00000539839 3282 ntBASIC19.82■□□□□ 0.76
COL4A1P02462 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A1P02462 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 ZNF589-204ENST00000440261 917 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 RALY-AS1-203ENST00000440595 660 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A1P02462 TARDBPP1-201ENST00000442013 1203 ntBASIC19.82■□□□□ 0.76
COL4A1P02462 ASF1B-202ENST00000474890 765 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A1P02462 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A1P02462 AC013451.1-201ENST00000554552 518 ntTSL 4 BASIC19.82■□□□□ 0.76
COL4A1P02462 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC19.82■□□□□ 0.76
COL4A1P02462 AC010319.3-201ENST00000597028 470 ntBASIC19.82■□□□□ 0.76
COL4A1P02462 AL512343.1-201ENST00000605837 169 ntBASIC19.82■□□□□ 0.76
COL4A1P02462 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 GJB3-201ENST00000373362 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC19.82■□□□□ 0.76
COL4A1P02462 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC19.82■□□□□ 0.76
COL4A1P02462 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
COL4A1P02462 IL18BP-204ENST00000393703 1788 ntAPPRIS P2 TSL 3 BASIC19.82■□□□□ 0.76
COL4A1P02462 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A1P02462 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
COL4A1P02462 REXO1L8P-201ENST00000604378 1897 ntBASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms