Protein–RNA interactions for Protein: O95476

CTDNEP1, CTD nuclear envelope phosphatase 1, humanhuman

Predictions only

Length 244 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1O95476 GBA2-203ENST00000378103 3611 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
CTDNEP1O95476 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CLEC18C-202ENST00000536907 1865 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 AC002056.1-201ENST00000395613 760 ntBASIC19.03■□□□□ 0.64
CTDNEP1O95476 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 ADH5P3-201ENST00000433842 1137 ntBASIC19.03■□□□□ 0.64
CTDNEP1O95476 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CAND2-206ENST00000626378 333 ntTSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 CACNA1A-246ENST00000637736 8340 ntAPPRIS ALT2 TSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
CTDNEP1O95476 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
CTDNEP1O95476 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 DAG1-219ENST00000538711 5582 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 VSX2-201ENST00000261980 2995 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 IGHV3OR16-6-201ENST00000568775 360 ntBASIC19.02■□□□□ 0.64
CTDNEP1O95476 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 AC002347.1-201ENST00000569543 541 ntBASIC19.02■□□□□ 0.64
CTDNEP1O95476 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
CTDNEP1O95476 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC19.02■□□□□ 0.64
CTDNEP1O95476 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CTDNEP1O95476 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC19.02■□□□□ 0.63
CTDNEP1O95476 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
CTDNEP1O95476 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.02■□□□□ 0.63
CTDNEP1O95476 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC19.02■□□□□ 0.63
CTDNEP1O95476 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC19.02■□□□□ 0.63
CTDNEP1O95476 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.02■□□□□ 0.63
CTDNEP1O95476 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.63
CTDNEP1O95476 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 SLC30A5-203ENST00000502979 681 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 QPRT-203ENST00000562473 579 ntTSL 3 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AL161645.1-201ENST00000622716 1255 ntBASIC19.01■□□□□ 0.63
CTDNEP1O95476 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 HTR1B-201ENST00000369947 2021 ntAPPRIS P1 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AL162727.3-201ENST00000635661 2787 ntBASIC19.01■□□□□ 0.63
CTDNEP1O95476 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.01■□□□□ 0.63
CTDNEP1O95476 ANKRD9-201ENST00000286918 6727 ntAPPRIS P1 TSL 1 (best) BASIC19.01■□□□□ 0.63
CTDNEP1O95476 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 46.9 ms