Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SHOX2O60902 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 AC003669.1-201ENST00000334569 611 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 UFSP1-201ENST00000388761 996 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
SHOX2O60902 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC16.53■□□□□ 0.24
SHOX2O60902 AC128688.1-201ENST00000487626 519 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.53■□□□□ 0.24
SHOX2O60902 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 FAM87A-204ENST00000613235 858 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 AC132938.5-201ENST00000624980 1813 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 BCL10-201ENST00000370580 2819 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 C18orf15-201ENST00000623680 2534 ntBASIC16.53■□□□□ 0.24
SHOX2O60902 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC16.53■□□□□ 0.24
SHOX2O60902 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC16.53■□□□□ 0.24
SHOX2O60902 CELP-203ENST00000624767 2414 ntTSL 5 BASIC16.53■□□□□ 0.24
SHOX2O60902 TRIM17-203ENST00000366697 2652 ntAPPRIS P1 TSL 2 BASIC16.53■□□□□ 0.24
SHOX2O60902 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
SHOX2O60902 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
SHOX2O60902 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 ARHGAP4-202ENST00000370016 3095 ntAPPRIS ALT2 TSL 5 BASIC16.52■□□□□ 0.24
SHOX2O60902 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 ACSM2B-207ENST00000565232 2322 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.52■□□□□ 0.24
SHOX2O60902 AJ011931.1-201ENST00000618749 2492 ntBASIC16.52■□□□□ 0.24
SHOX2O60902 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC16.52■□□□□ 0.24
SHOX2O60902 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC16.52■□□□□ 0.24
SHOX2O60902 NAPSB-206ENST00000562112 1266 ntBASIC16.52■□□□□ 0.24
SHOX2O60902 AL136038.4-201ENST00000603606 1261 ntBASIC16.52■□□□□ 0.24
SHOX2O60902 FP565260.3-205ENST00000620481 816 ntTSL 5 BASIC16.52■□□□□ 0.24
SHOX2O60902 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 AC006504.5-208ENST00000588784 2401 ntBASIC16.52■□□□□ 0.24
SHOX2O60902 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.52■□□□□ 0.24
SHOX2O60902 DCUN1D2-201ENST00000332592 2626 ntTSL 2 BASIC16.52■□□□□ 0.23
SHOX2O60902 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 ATG4B-206ENST00000405546 3294 ntTSL 2 BASIC16.52■□□□□ 0.23
SHOX2O60902 CEACAM21-203ENST00000407170 1691 ntTSL 2 BASIC16.52■□□□□ 0.23
SHOX2O60902 CHST5-201ENST00000336257 3245 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC16.52■□□□□ 0.23
SHOX2O60902 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC16.52■□□□□ 0.23
SHOX2O60902 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC16.52■□□□□ 0.23
SHOX2O60902 AC009090.5-201ENST00000624886 2285 ntBASIC16.52■□□□□ 0.23
SHOX2O60902 AC104452.1-203ENST00000636166 2266 ntAPPRIS P1 TSL 5 BASIC16.52■□□□□ 0.23
SHOX2O60902 TBPL2-201ENST00000247219 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.23
SHOX2O60902 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 C1R-201ENST00000535233 2211 ntTSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 DDHD2-201ENST00000397166 4921 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 PDPR-202ENST00000398122 2734 ntTSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 MYADM-205ENST00000391771 3111 ntAPPRIS P1 TSL 2 BASIC16.51■□□□□ 0.23
SHOX2O60902 RNF222-202ENST00000399398 3062 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 PSMD6-210ENST00000492933 1495 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
SHOX2O60902 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC16.51■□□□□ 0.23
SHOX2O60902 ERICH4-201ENST00000378187 946 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
SHOX2O60902 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC16.51■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms