Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 LATS1-202ENST00000392273 2567 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 NCF1C-201ENST00000438382 1427 ntBASIC14.1□□□□□ -0.15
SDCBPO00560 PCDH10-201ENST00000264360 8489 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 TMEM155-202ENST00000394394 1753 ntAPPRIS P2 TSL 3 BASIC14.1□□□□□ -0.15
SDCBPO00560 S100A11-201ENST00000271638 594 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 DFFB-203ENST00000341385 572 ntTSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 NDUFB9-204ENST00000518008 789 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 AP1S2-206ENST00000545766 576 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 BLOC1S6-202ENST00000562384 494 ntTSL 4 BASIC14.1□□□□□ -0.15
SDCBPO00560 AL603832.2-201ENST00000566195 2125 ntBASIC14.1□□□□□ -0.15
SDCBPO00560 TMEM220-203ENST00000578345 559 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC14.1□□□□□ -0.15
SDCBPO00560 NKAPP1-205ENST00000585790 367 ntBASIC14.1□□□□□ -0.15
SDCBPO00560 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 TRAPPC3-209ENST00000616395 1336 ntTSL 3 BASIC14.1□□□□□ -0.15
SDCBPO00560 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC14.1□□□□□ -0.15
SDCBPO00560 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 OGFRL1-201ENST00000370435 8391 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
SDCBPO00560 SEPT8-208ENST00000378721 1723 ntTSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC14.1□□□□□ -0.15
SDCBPO00560 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC14.09□□□□□ -0.15
SDCBPO00560 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 BRD2-202ENST00000374831 4807 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC14.09□□□□□ -0.15
SDCBPO00560 KRT8P49-201ENST00000604166 1432 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 BSG-202ENST00000346916 1605 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 AC006277.1-201ENST00000624348 1610 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 SAP130-201ENST00000259234 4140 ntAPPRIS P1 TSL 5 BASIC14.09□□□□□ -0.15
SDCBPO00560 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 TSPY19P-201ENST00000418461 509 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC14.09□□□□□ -0.15
SDCBPO00560 TSPY18P-201ENST00000441642 509 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 PRYP5-201ENST00000451909 266 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 TMEM218-203ENST00000526175 972 ntAPPRIS P1 TSL 3 BASIC14.09□□□□□ -0.15
SDCBPO00560 ABO-202ENST00000538324 1147 ntAPPRIS P5 TSL 5 BASIC14.09□□□□□ -0.15
SDCBPO00560 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.09□□□□□ -0.15
SDCBPO00560 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 BLOC1S6-214ENST00000567461 1052 ntTSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 AC008608.2-201ENST00000606089 416 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC14.09□□□□□ -0.15
SDCBPO00560 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
SDCBPO00560 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC14.09□□□□□ -0.15
SDCBPO00560 AL671710.1-201ENST00000610245 2349 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC14.09□□□□□ -0.15
SDCBPO00560 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC14.09□□□□□ -0.15
SDCBPO00560 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 CLEC18C-203ENST00000541793 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC14.09□□□□□ -0.15
SDCBPO00560 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.09□□□□□ -0.15
SDCBPO00560 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC14.08□□□□□ -0.15
SDCBPO00560 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC14.08□□□□□ -0.15
SDCBPO00560 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SDCBPO00560 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC14.08□□□□□ -0.15
SDCBPO00560 PRKD2-216ENST00000601806 2906 ntAPPRIS ALT2 TSL 5 BASIC14.08□□□□□ -0.15
SDCBPO00560 AZIN2-203ENST00000373441 1443 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
SDCBPO00560 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC14.08□□□□□ -0.16
SDCBPO00560 FES-204ENST00000414248 2327 ntTSL 2 BASIC14.08□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms