Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PKD1P5-201ENST00000532415 10291 ntBASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC004817.3-201ENST00000602957 2129 ntBASIC16.06■□□□□ 0.16
VPS4AQ9UN37 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 GFOD1-203ENST00000379287 8751 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 HIST1H2BN-204ENST00000612898 1723 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TMEM37-201ENST00000306406 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 LYNX1-206ENST00000621401 4537 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 RER1-202ENST00000378512 1404 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TOR3A-201ENST00000352445 1182 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 CALY-203ENST00000368558 825 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC136632.2-201ENST00000512891 861 ntBASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ETFA-208ENST00000559602 792 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 CDC42EP4-206ENST00000581014 737 ntTSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 SDCCAG3P1-201ENST00000589292 1150 ntBASIC16.06■□□□□ 0.16
VPS4AQ9UN37 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 SMIM13-202ENST00000416247 4688 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VPS4AQ9UN37 EPS8-201ENST00000281172 4061 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 KRT15-201ENST00000254043 5237 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 HYMAI-201ENST00000635591 3347 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AP002414.1-201ENST00000391405 1147 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 HDAC11-202ENST00000402259 1000 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AL035633.1-201ENST00000406139 838 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 COX20P2-201ENST00000452636 358 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 ALG1L5P-201ENST00000482043 771 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 LINC00668-203ENST00000579012 605 ntTSL 3 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC073592.4-201ENST00000623827 446 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 PPP1R16B-201ENST00000299824 6251 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC006449.5-201ENST00000610658 2098 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 GABRB3-215ENST00000622697 5876 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 EIF4A3-201ENST00000269349 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 PCNX2-201ENST00000258229 7518 ntAPPRIS P2 TSL 5 BASIC16.05■□□□□ 0.16
VPS4AQ9UN37 AC079776.2-201ENST00000641154 1609 ntBASIC16.05■□□□□ 0.16
VPS4AQ9UN37 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
VPS4AQ9UN37 FOS-208ENST00000555686 1496 ntTSL 2 BASIC16.04■□□□□ 0.16
VPS4AQ9UN37 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms