Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 NEK7-201ENST00000367383 586 ntTSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 AL355306.1-201ENST00000415580 579 ntBASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 IGHV3OR16-6-201ENST00000568775 360 ntBASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 C5orf24-202ENST00000394976 5065 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC21.16■□□□□ 0.98
SMC4Q9NTJ3 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 AC005622.1-201ENST00000636801 1703 ntBASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SPACA4-201ENST00000321762 972 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 VMO1-203ENST00000416307 712 ntTSL 2 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 CR559946.1-201ENST00000453835 531 ntTSL 4 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 RARRES2P8-201ENST00000566335 367 ntBASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 UNC13A-206ENST00000552293 5314 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 REXO1L8P-201ENST00000604378 1897 ntBASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SMC4Q9NTJ3 UGCG-201ENST00000374279 4007 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.98
SMC4Q9NTJ3 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 MTDHP5-201ENST00000598980 586 ntBASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 C20orf181-201ENST00000623918 480 ntBASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 ZADH2-201ENST00000322342 7732 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 PTGDR2-201ENST00000332539 2895 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SMC4Q9NTJ3 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 AL162311.3-201ENST00000555918 2867 ntTSL 2 BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 CALU-205ENST00000535011 3210 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SMC4Q9NTJ3 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms