Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTA1Q9NP79 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC18.33■□□□□ 0.52
VTA1Q9NP79 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC18.33■□□□□ 0.52
VTA1Q9NP79 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 LINC01144-201ENST00000626198 1710 ntBASIC18.32■□□□□ 0.52
VTA1Q9NP79 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 CD81-207ENST00000481687 890 ntTSL 2 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 ARL16-202ENST00000570561 768 ntTSL 2 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 SRD5A3P1-201ENST00000603021 949 ntBASIC18.32■□□□□ 0.52
VTA1Q9NP79 AL365330.1-201ENST00000607459 531 ntBASIC18.32■□□□□ 0.52
VTA1Q9NP79 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC18.32■□□□□ 0.52
VTA1Q9NP79 FBXL7-202ENST00000504595 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC18.32■□□□□ 0.52
VTA1Q9NP79 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 SLC7A15P-201ENST00000424028 1363 ntBASIC18.31■□□□□ 0.52
VTA1Q9NP79 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 ING1-204ENST00000375775 1074 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AP006294.1-201ENST00000415407 339 ntBASIC18.31■□□□□ 0.52
VTA1Q9NP79 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AC068898.1-201ENST00000440750 335 ntTSL 3 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AC055876.2-201ENST00000531834 546 ntBASIC18.31■□□□□ 0.52
VTA1Q9NP79 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 CHCHD2P3-201ENST00000603038 451 ntBASIC18.31■□□□□ 0.52
VTA1Q9NP79 GNRHR2-204ENST00000604273 1078 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 AC004461.2-201ENST00000629517 803 ntBASIC18.31■□□□□ 0.52
VTA1Q9NP79 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 PNPO-201ENST00000225573 2256 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC18.31■□□□□ 0.52
VTA1Q9NP79 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC18.31■□□□□ 0.52
VTA1Q9NP79 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 MCCC1-214ENST00000610757 2410 ntTSL 5 BASIC18.3■□□□□ 0.52
VTA1Q9NP79 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC18.3■□□□□ 0.52
VTA1Q9NP79 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC18.3■□□□□ 0.52
Retrieved 100 of 98,524 protein–RNA pairs in 28.5 ms