Protein–RNA interactions for Protein: Q9HAW0

BRF2, Transcription factor IIIB 50 kDa subunit, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF2Q9HAW0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 WWOX-204ENST00000408984 1227 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 MOK-203ENST00000517966 1230 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 AC034105.1-201ENST00000563488 319 ntBASIC15.79■□□□□ 0.12
BRF2Q9HAW0 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 AQP6-205ENST00000618286 829 ntTSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
BRF2Q9HAW0 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 LINC02167-203ENST00000566900 1489 ntTSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 AC092474.2-201ENST00000424288 719 ntBASIC15.78■□□□□ 0.12
BRF2Q9HAW0 AC140658.5-201ENST00000438532 169 ntBASIC15.78■□□□□ 0.12
BRF2Q9HAW0 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 SPINT1-AS1-202ENST00000564302 643 ntTSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 CLCNKA-203ENST00000439316 1997 ntTSL 2 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 ACIN1-205ENST00000457657 4815 ntAPPRIS ALT2 TSL 5 BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.78■□□□□ 0.12
BRF2Q9HAW0 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AC104109.2-201ENST00000602919 1418 ntBASIC15.77■□□□□ 0.12
BRF2Q9HAW0 GFM1-208ENST00000478576 2147 ntTSL 2 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AL603832.2-201ENST00000566195 2125 ntBASIC15.77■□□□□ 0.12
BRF2Q9HAW0 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 DCTN3-201ENST00000259632 808 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 IFNL1-201ENST00000333625 857 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 MIR648-201ENST00000385046 94 ntBASIC15.77■□□□□ 0.12
BRF2Q9HAW0 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 CFL1-202ENST00000524553 860 ntTSL 2 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 FAM71E1-202ENST00000595790 1225 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AC064836.3-201ENST00000607928 673 ntBASIC15.77■□□□□ 0.12
BRF2Q9HAW0 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC15.77■□□□□ 0.12
BRF2Q9HAW0 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BRF2Q9HAW0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
BRF2Q9HAW0 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC15.77■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms