Protein–RNA interactions for Protein: Q33E94

RFX4, Transcription factor RFX4, humanhuman

Predictions only

Length 735 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX4Q33E94 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.43■□□□□ 0.06
RFX4Q33E94 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.43■□□□□ 0.06
RFX4Q33E94 C19orf25-204ENST00000586564 1265 ntAPPRIS P1 TSL 3 BASIC15.43■□□□□ 0.06
RFX4Q33E94 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC15.43■□□□□ 0.06
RFX4Q33E94 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC15.43■□□□□ 0.06
RFX4Q33E94 AC116407.4-201ENST00000623319 1061 ntBASIC15.43■□□□□ 0.06
RFX4Q33E94 AP000867.4-201ENST00000641616 219 ntBASIC15.43■□□□□ 0.06
RFX4Q33E94 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFX4Q33E94 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC15.43■□□□□ 0.06
RFX4Q33E94 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC15.43■□□□□ 0.06
RFX4Q33E94 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC15.43■□□□□ 0.06
RFX4Q33E94 SLC6A13-201ENST00000343164 2185 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFX4Q33E94 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFX4Q33E94 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.43■□□□□ 0.06
RFX4Q33E94 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.43■□□□□ 0.06
RFX4Q33E94 PRKD2-214ENST00000600194 2923 ntAPPRIS ALT2 TSL 2 BASIC15.43■□□□□ 0.06
RFX4Q33E94 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFX4Q33E94 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.43■□□□□ 0.06
RFX4Q33E94 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC15.43■□□□□ 0.06
RFX4Q33E94 NSUN5P1-202ENST00000421140 1535 ntBASIC15.43■□□□□ 0.06
RFX4Q33E94 NSUN5P2-203ENST00000457352 1529 ntBASIC15.43■□□□□ 0.06
RFX4Q33E94 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC15.43■□□□□ 0.06
RFX4Q33E94 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.43■□□□□ 0.06
RFX4Q33E94 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC15.43■□□□□ 0.06
RFX4Q33E94 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 APAF1-203ENST00000359972 7029 ntAPPRIS ALT1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 FGFR1OP2-201ENST00000229395 2924 ntTSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 KMT5B-205ENST00000402789 1599 ntTSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 CEP170B-203ENST00000453495 6813 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 TAP2-205ENST00000620123 5676 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.42■□□□□ 0.06
RFX4Q33E94 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
RFX4Q33E94 IGHV3-47-201ENST00000425060 335 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 METTL21A-205ENST00000426075 1051 ntAPPRIS P1 TSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC15.42■□□□□ 0.06
RFX4Q33E94 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 NUS1P1-201ENST00000446295 882 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 TOB2P1-201ENST00000469761 992 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 AC096582.2-201ENST00000510860 516 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 CIB2-208ENST00000560618 804 ntTSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC15.42■□□□□ 0.06
RFX4Q33E94 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.42■□□□□ 0.06
RFX4Q33E94 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 HNRNPA1-202ENST00000340913 1842 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 CDC14C-201ENST00000428251 1719 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.42■□□□□ 0.06
RFX4Q33E94 AC148477.5-201ENST00000625164 1645 ntBASIC15.42■□□□□ 0.06
RFX4Q33E94 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC15.42■□□□□ 0.06
RFX4Q33E94 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC15.42■□□□□ 0.06
RFX4Q33E94 HARS-204ENST00000438307 1789 ntTSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 RCAN3-210ENST00000618490 2386 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 GPR89B-201ENST00000314163 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 TFAP2D-201ENST00000008391 1711 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 TXNDC2-206ENST00000611534 2066 ntAPPRIS ALT2 TSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 FUOM-202ENST00000368551 628 ntTSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 ATP5J-203ENST00000400090 647 ntAPPRIS P1 TSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC15.41■□□□□ 0.06
RFX4Q33E94 POM121L3P-201ENST00000419331 1163 ntBASIC15.41■□□□□ 0.06
RFX4Q33E94 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC15.41■□□□□ 0.06
RFX4Q33E94 AP002383.4-201ENST00000442518 975 ntBASIC15.41■□□□□ 0.06
RFX4Q33E94 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 BARHL1-202ENST00000542090 1197 ntAPPRIS P1 TSL 1 (best) BASIC15.41■□□□□ 0.06
RFX4Q33E94 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 COX5A-202ENST00000562233 441 ntTSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 AL049597.2-201ENST00000565575 961 ntBASIC15.41■□□□□ 0.06
RFX4Q33E94 COX5A-204ENST00000567270 579 ntTSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC15.41■□□□□ 0.06
RFX4Q33E94 AP002414.4-201ENST00000589764 1148 ntBASIC15.41■□□□□ 0.06
RFX4Q33E94 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC15.41■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms