Protein–RNA interactions for Protein: P35499

SCN4A, Sodium channel protein type 4 subunit alpha, humanhuman

Predictions only

Length 1,836 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN4AP35499 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 CTNNBIP1-202ENST00000377258 852 ntAPPRIS P1 TSL 3 BASIC19.13■□□□□ 0.65
SCN4AP35499 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
SCN4AP35499 C2orf27AP3-201ENST00000434123 579 ntBASIC19.13■□□□□ 0.65
SCN4AP35499 APOA2-204ENST00000464492 530 ntTSL 3 BASIC19.13■□□□□ 0.65
SCN4AP35499 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC19.13■□□□□ 0.65
SCN4AP35499 AP006547.1-201ENST00000563435 692 ntBASIC19.13■□□□□ 0.65
SCN4AP35499 AC068152.1-201ENST00000575930 685 ntTSL 5 BASIC19.13■□□□□ 0.65
SCN4AP35499 AL354718.3-201ENST00000616414 581 ntBASIC19.13■□□□□ 0.65
SCN4AP35499 CR382287.1-201ENST00000623954 586 ntBASIC19.13■□□□□ 0.65
SCN4AP35499 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
SCN4AP35499 ICA1-206ENST00000402384 2458 ntAPPRIS P3 TSL 2 BASIC19.13■□□□□ 0.65
SCN4AP35499 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SCN4AP35499 GUK1-206ENST00000366723 845 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN4AP35499 SMIM11A-203ENST00000399299 1033 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC19.12■□□□□ 0.65
SCN4AP35499 AC005077.2-201ENST00000449786 690 ntBASIC19.12■□□□□ 0.65
SCN4AP35499 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC19.12■□□□□ 0.65
SCN4AP35499 AC245100.5-201ENST00000452108 331 ntBASIC19.12■□□□□ 0.65
SCN4AP35499 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 AC020914.3-201ENST00000594712 304 ntBASIC19.12■□□□□ 0.65
SCN4AP35499 ARRB2-204ENST00000412477 1779 ntTSL 2 BASIC19.12■□□□□ 0.65
SCN4AP35499 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 LETM1P2-201ENST00000597330 2178 ntBASIC19.12■□□□□ 0.65
SCN4AP35499 CITED2-201ENST00000367651 2354 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 OGG1-203ENST00000302036 2220 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 KLK5-202ENST00000391809 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
SCN4AP35499 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC19.12■□□□□ 0.65
SCN4AP35499 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 TEX30-203ENST00000376022 828 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN4AP35499 RAB1A-201ENST00000398529 1198 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 AC128709.2-201ENST00000438408 558 ntTSL 4 BASIC19.11■□□□□ 0.65
SCN4AP35499 MPRIPP1-201ENST00000452433 1089 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC19.11■□□□□ 0.65
SCN4AP35499 VDAC1P7-201ENST00000462417 847 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 HIST2H2BC-201ENST00000498492 580 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 RERG-205ENST00000537647 935 ntTSL 2 BASIC19.11■□□□□ 0.65
SCN4AP35499 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC19.11■□□□□ 0.65
SCN4AP35499 AC128714.1-201ENST00000637035 887 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 BICD1-207ENST00000551848 1962 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 USP27X-AS1-201ENST00000437322 2175 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 GDA-201ENST00000238018 2074 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 AL512652.2-201ENST00000625156 1716 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 SLC22A4-201ENST00000200652 2201 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 ZNF248-202ENST00000374648 1286 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 BRF1-202ENST00000379932 884 ntTSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 CENPM-208ENST00000472374 541 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 SSTR5-AS1-201ENST00000565992 575 ntTSL 4 BASIC19.11■□□□□ 0.65
SCN4AP35499 AC025279.2-201ENST00000569730 653 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
SCN4AP35499 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 AC138627.1-207ENST00000641560 1006 ntBASIC19.11■□□□□ 0.65
SCN4AP35499 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
SCN4AP35499 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 NEFHP1-201ENST00000412845 2629 ntBASIC19.1■□□□□ 0.65
SCN4AP35499 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 AP4M1-201ENST00000359593 1817 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 AP4M1-206ENST00000429084 1836 ntTSL 5 BASIC19.1■□□□□ 0.65
SCN4AP35499 SLC39A13-213ENST00000533076 1805 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 SLURP2-201ENST00000317543 599 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
SCN4AP35499 EPDR1-203ENST00000425345 947 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
SCN4AP35499 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC19.1■□□□□ 0.65
SCN4AP35499 PFN2-215ENST00000497148 743 ntTSL 4 BASIC19.1■□□□□ 0.65
SCN4AP35499 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 32.7 ms