Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 HDAC11-201ENST00000295757 2960 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
FOXA3P55318 OSBPL3-201ENST00000313367 6760 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 SLC12A9-202ENST00000415287 1912 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 GPBAR1-201ENST00000479077 1869 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 LSP1-217ENST00000612798 1881 ntAPPRIS ALT2 TSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 BCS1L-202ENST00000392109 1583 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 BCS1L-204ENST00000392111 1584 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 SLC4A3-202ENST00000317151 4069 ntAPPRIS P1 TSL 5 BASIC12.49□□□□□ -0.41
FOXA3P55318 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 FAM19A3-201ENST00000361886 1056 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC12.49□□□□□ -0.41
FOXA3P55318 HMGA1P5-201ENST00000412453 271 ntBASIC12.49□□□□□ -0.41
FOXA3P55318 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC12.49□□□□□ -0.41
FOXA3P55318 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA3P55318 RASA4DP-201ENST00000460726 1199 ntBASIC12.49□□□□□ -0.41
FOXA3P55318 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 AC103957.2-201ENST00000521218 510 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
FOXA3P55318 GCSHP2-201ENST00000560971 527 ntBASIC12.49□□□□□ -0.41
FOXA3P55318 Z99916.2-201ENST00000604037 246 ntBASIC12.49□□□□□ -0.41
FOXA3P55318 COLCA2-205ENST00000614153 1264 ntTSL 3 BASIC12.49□□□□□ -0.41
FOXA3P55318 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 DNAJC14-201ENST00000317269 3330 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC12.49□□□□□ -0.41
FOXA3P55318 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 KRT77-201ENST00000341809 3305 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
FOXA3P55318 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 CYP1B1-205ENST00000610745 5250 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 FKBP3-201ENST00000216330 1684 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 CICP13-201ENST00000422015 2789 ntBASIC12.48□□□□□ -0.41
FOXA3P55318 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 PLAGL1-208ENST00000437412 2640 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 ARHGAP23-221ENST00000620417 3663 ntAPPRIS ALT2 TSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 SNX19-207ENST00000528555 1506 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 CYP2D8P-201ENST00000433633 1490 ntBASIC12.48□□□□□ -0.41
FOXA3P55318 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 RREB1-202ENST00000349384 7440 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 EDIL3-201ENST00000296591 4727 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 MTHFD1L-201ENST00000367307 1049 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 AL158047.1-201ENST00000445918 881 ntBASIC12.48□□□□□ -0.41
FOXA3P55318 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 STK19B-204ENST00000512515 211 ntBASIC12.48□□□□□ -0.41
FOXA3P55318 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
FOXA3P55318 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC12.48□□□□□ -0.41
FOXA3P55318 RASGRF2-206ENST00000638442 2842 ntTSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC12.48□□□□□ -0.41
FOXA3P55318 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 HTR1A-201ENST00000323865 1778 ntAPPRIS P1 BASIC12.48□□□□□ -0.41
FOXA3P55318 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 MYADML2-201ENST00000409745 2452 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 GAL3ST4-204ENST00000423751 1695 ntTSL 3 BASIC12.48□□□□□ -0.41
FOXA3P55318 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC12.48□□□□□ -0.41
FOXA3P55318 AC006277.1-201ENST00000624348 1610 ntBASIC12.48□□□□□ -0.41
FOXA3P55318 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC12.47□□□□□ -0.41
FOXA3P55318 ANKRD18A-201ENST00000399703 4041 ntAPPRIS P1 TSL 1 (best) BASIC12.47□□□□□ -0.41
FOXA3P55318 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC12.47□□□□□ -0.41
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms