Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC15.62■□□□□ 0.09
SOX3P41225 LINC01842-201ENST00000588275 768 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 RPAP3-203ENST00000432584 2133 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 PAUPAR-201ENST00000630360 2965 ntBASIC15.62■□□□□ 0.09
SOX3P41225 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.62■□□□□ 0.09
SOX3P41225 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 LTBP4-205ENST00000396819 4764 ntAPPRIS ALT2 TSL 1 (best) BASIC15.62■□□□□ 0.09
SOX3P41225 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 MAGEA2-208ENST00000623438 2009 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 MYB-201ENST00000316528 3571 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 MYB-241ENST00000616088 3573 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 TMUB2-212ENST00000589785 1918 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 CCDC107-201ENST00000327351 804 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC15.61■□□□□ 0.09
SOX3P41225 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC15.61■□□□□ 0.09
SOX3P41225 UBXN1-210ENST00000529640 1110 ntAPPRIS ALT1 TSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.61■□□□□ 0.09
SOX3P41225 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 ELF2-207ENST00000510408 1965 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 TAF3-201ENST00000344293 4872 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 CYP2T1P-202ENST00000641596 2535 ntBASIC15.61■□□□□ 0.09
SOX3P41225 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 WRAP53-203ENST00000431639 1818 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 WRAP53-204ENST00000457584 1828 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 LARP4B-211ENST00000612396 8546 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
SOX3P41225 TMC7-201ENST00000304381 3640 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
SOX3P41225 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.61■□□□□ 0.09
SOX3P41225 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 CBX8-201ENST00000269385 3791 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 FAM189B-202ENST00000361361 3082 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 TTYH2-206ENST00000529107 2015 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX3P41225 AC103702.1-201ENST00000548801 2630 ntBASIC15.6■□□□□ 0.09
SOX3P41225 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX3P41225 KCNIP2-208ENST00000370046 923 ntTSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX3P41225 AC074386.1-202ENST00000463561 864 ntBASIC15.6■□□□□ 0.09
SOX3P41225 ALG1L5P-201ENST00000482043 771 ntBASIC15.6■□□□□ 0.09
SOX3P41225 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX3P41225 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX3P41225 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.6■□□□□ 0.09
SOX3P41225 AC005256.1-202ENST00000592934 415 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX3P41225 AL078644.1-201ENST00000609881 752 ntBASIC15.6■□□□□ 0.09
SOX3P41225 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 NDUFA11-205ENST00000592634 2154 ntTSL 2 BASIC15.6■□□□□ 0.09
SOX3P41225 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 PSMC3IP-204ENST00000587209 1381 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
SOX3P41225 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
SOX3P41225 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.6■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms