Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 PMS2P4-201ENST00000412466 1052 ntBASIC15.17■□□□□ 0.02
RFC3P40938 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 GPS2P2-201ENST00000430745 888 ntBASIC15.17■□□□□ 0.02
RFC3P40938 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC15.17■□□□□ 0.02
RFC3P40938 LINC01225-203ENST00000563550 1244 ntBASIC15.17■□□□□ 0.02
RFC3P40938 AC027307.2-201ENST00000591252 911 ntBASIC15.17■□□□□ 0.02
RFC3P40938 GMFG-207ENST00000598034 1028 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
RFC3P40938 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 STK24-203ENST00000397517 4578 ntTSL 2 BASIC15.17■□□□□ 0.02
RFC3P40938 CRAMP1-202ENST00000397412 7772 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
RFC3P40938 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
RFC3P40938 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.17■□□□□ 0.02
RFC3P40938 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC15.17■□□□□ 0.02
RFC3P40938 DPY19L3-206ENST00000587077 2456 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 FLJ38576-201ENST00000623820 2459 ntBASIC15.17■□□□□ 0.02
RFC3P40938 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
RFC3P40938 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFC3P40938 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 RREB1-204ENST00000379938 8778 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
RFC3P40938 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 CHCHD3-201ENST00000262570 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 NKAIN2-201ENST00000368416 1106 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC15.16■□□□□ 0.02
RFC3P40938 MAPK15-202ENST00000395107 834 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 AL391845.1-202ENST00000449154 437 ntTSL 3 BASIC15.16■□□□□ 0.02
RFC3P40938 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC15.16■□□□□ 0.02
RFC3P40938 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC15.16■□□□□ 0.02
RFC3P40938 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
RFC3P40938 AC124947.2-201ENST00000547118 1133 ntBASIC15.16■□□□□ 0.02
RFC3P40938 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC15.16■□□□□ 0.02
RFC3P40938 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC15.16■□□□□ 0.02
RFC3P40938 COX5A-203ENST00000564811 568 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 TRAPPC6A-202ENST00000585934 758 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 AC005498.2-205ENST00000593218 784 ntBASIC15.16■□□□□ 0.02
RFC3P40938 AC011467.4-201ENST00000594891 528 ntBASIC15.16■□□□□ 0.02
RFC3P40938 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC15.16■□□□□ 0.02
RFC3P40938 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.16■□□□□ 0.02
RFC3P40938 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC15.16■□□□□ 0.02
RFC3P40938 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
RFC3P40938 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.16■□□□□ 0.02
RFC3P40938 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
RFC3P40938 TUBB8P12-201ENST00000308911 1335 ntBASIC15.16■□□□□ 0.02
RFC3P40938 TUBB7P-202ENST00000428444 1305 ntBASIC15.16■□□□□ 0.02
RFC3P40938 TUBB8P7-204ENST00000567960 1332 ntBASIC15.16■□□□□ 0.02
RFC3P40938 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC15.16■□□□□ 0.02
RFC3P40938 NKIRAS1-208ENST00000443659 2391 ntAPPRIS P2 TSL 5 BASIC15.16■□□□□ 0.02
RFC3P40938 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 CFC1B-202ENST00000619050 1554 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 TCP10L2-202ENST00000366832 2185 ntAPPRIS P2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 POLR3H-202ENST00000355209 4416 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 IQCE-204ENST00000404984 2086 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 TAF1D-203ENST00000448108 2082 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 TNIP1-220ENST00000610535 2726 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC15.15■□□□□ 0.02
RFC3P40938 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 YAE1D1-202ENST00000432096 968 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.15■□□□□ 0.02
RFC3P40938 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 AGGF1-204ENST00000506806 1142 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 LAT-209ENST00000564277 921 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RFC3P40938 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC15.15■□□□□ 0.02
RFC3P40938 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC15.15■□□□□ 0.02
RFC3P40938 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RFC3P40938 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms