Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.82■□□□□ 0.28
VCANP13611 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC16.82■□□□□ 0.28
VCANP13611 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC16.82■□□□□ 0.28
VCANP13611 AC011466.1-201ENST00000595201 566 ntTSL 4 BASIC16.82■□□□□ 0.28
VCANP13611 ZNF528-AS1-202ENST00000596746 929 ntTSL 5 BASIC16.82■□□□□ 0.28
VCANP13611 DDX39A-201ENST00000242776 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 LINC00671-201ENST00000301683 1958 ntTSL 2 BASIC16.82■□□□□ 0.28
VCANP13611 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
VCANP13611 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 CU633904.3-201ENST00000624042 1029 ntBASIC16.81■□□□□ 0.28
VCANP13611 AL139011.1-202ENST00000642063 584 ntBASIC16.81■□□□□ 0.28
VCANP13611 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 GRAMD1B-214ENST00000635736 2814 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
VCANP13611 ANKRD13B-209ENST00000614878 2670 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 AC016700.1-201ENST00000429424 312 ntBASIC16.81■□□□□ 0.28
VCANP13611 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC16.81■□□□□ 0.28
VCANP13611 TSPO-206ENST00000583777 636 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 CDK3-202ENST00000448471 1570 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
VCANP13611 CTRC-202ENST00000375949 898 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 CTBP2P4-201ENST00000513884 920 ntBASIC16.81■□□□□ 0.28
VCANP13611 AL133499.1-201ENST00000596207 608 ntBASIC16.81■□□□□ 0.28
VCANP13611 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC16.81■□□□□ 0.28
VCANP13611 AHRR-209ENST00000512529 1912 ntTSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC16.81■□□□□ 0.28
VCANP13611 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
VCANP13611 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 PSTPIP1-203ENST00000558012 1896 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
VCANP13611 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 LY6E-208ENST00000520531 490 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 MNT-208ENST00000575394 606 ntTSL 4 BASIC16.8■□□□□ 0.28
VCANP13611 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 DEK-201ENST00000244776 1441 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 PFDN4-201ENST00000371419 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 EEF1DP6-201ENST00000449232 372 ntBASIC16.8■□□□□ 0.28
VCANP13611 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC16.8■□□□□ 0.28
VCANP13611 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 AL353726.2-201ENST00000623259 884 ntBASIC16.8■□□□□ 0.28
VCANP13611 AL158212.4-201ENST00000624062 1286 ntBASIC16.8■□□□□ 0.28
VCANP13611 TNFRSF8-202ENST00000413146 2363 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 DACT3-203ENST00000410105 3085 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 BAGE2-202ENST00000474011 1482 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 FAM90A1-201ENST00000307435 2342 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
VCANP13611 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 NPBWR1-201ENST00000331251 2687 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
VCANP13611 AC131097.2-203ENST00000401641 507 ntAPPRIS ALT2 TSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC16.8■□□□□ 0.28
VCANP13611 ATP6V0CP2-201ENST00000469409 207 ntBASIC16.8■□□□□ 0.28
VCANP13611 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC16.8■□□□□ 0.28
VCANP13611 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
VCANP13611 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC16.8■□□□□ 0.28
VCANP13611 ARFRP1-212ENST00000618838 1623 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
VCANP13611 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 ENPP7P5-201ENST00000541031 1031 ntBASIC16.79■□□□□ 0.28
VCANP13611 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC16.79■□□□□ 0.28
VCANP13611 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC16.79■□□□□ 0.28
VCANP13611 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 BCAS4-201ENST00000358791 1378 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 IL10RB-201ENST00000290200 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
VCANP13611 NR0B2-201ENST00000254227 1156 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 39.7 ms