Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC19.5■□□□□ 0.71
HMGB1P09429 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
HMGB1P09429 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
HMGB1P09429 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC19.5■□□□□ 0.71
HMGB1P09429 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC19.49■□□□□ 0.71
HMGB1P09429 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 HYAL3-207ENST00000621157 1696 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 AC002056.1-201ENST00000395613 760 ntBASIC19.49■□□□□ 0.71
HMGB1P09429 MECP2-203ENST00000407218 1174 ntTSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 DANCR-201ENST00000411630 904 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 BEAN1-203ENST00000561796 1078 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 AP002472.1-201ENST00000577490 586 ntBASIC19.49■□□□□ 0.71
HMGB1P09429 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 AC092919.2-201ENST00000623631 1645 ntBASIC19.49■□□□□ 0.71
HMGB1P09429 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 AL592424.1-201ENST00000563624 1536 ntBASIC19.49■□□□□ 0.71
HMGB1P09429 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
HMGB1P09429 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.49■□□□□ 0.71
HMGB1P09429 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC19.49■□□□□ 0.71
HMGB1P09429 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC19.49■□□□□ 0.71
HMGB1P09429 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HMGB1P09429 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 CYP4B1-203ENST00000371923 2110 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGB1P09429 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC19.48■□□□□ 0.71
HMGB1P09429 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC19.48■□□□□ 0.71
HMGB1P09429 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC19.48■□□□□ 0.71
HMGB1P09429 TCEAL2-202ENST00000372780 1100 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
HMGB1P09429 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
HMGB1P09429 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.48■□□□□ 0.71
HMGB1P09429 AL513190.1-201ENST00000621254 727 ntBASIC19.48■□□□□ 0.71
HMGB1P09429 CEP72-201ENST00000264935 2434 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.48■□□□□ 0.71
HMGB1P09429 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
HMGB1P09429 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 SLC22A1-202ENST00000366963 1948 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 ZBP1-202ENST00000395822 2073 ntTSL 2 BASIC19.47■□□□□ 0.71
HMGB1P09429 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC19.47■□□□□ 0.71
HMGB1P09429 AC112191.1-201ENST00000523689 701 ntBASIC19.47■□□□□ 0.71
HMGB1P09429 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HMGB1P09429 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC19.47■□□□□ 0.71
HMGB1P09429 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC19.47■□□□□ 0.71
HMGB1P09429 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC19.47■□□□□ 0.71
HMGB1P09429 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 WASH6P-202ENST00000359512 1437 ntBASIC19.47■□□□□ 0.71
HMGB1P09429 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
HMGB1P09429 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC19.47■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 77.3 ms